This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c8c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:46, 27 January 2022) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c8c.jpg|left|200px]]<br /><applet load="3c8c" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c8c, resolution 1.50&Aring;" />
 
-
'''Crystal structure of Mcp_N and cache domains of methyl-accepting chemotaxis protein from Vibrio cholerae'''<br />
 
-
==About this Structure==
+
==Crystal structure of Mcp_N and cache domains of methyl-accepting chemotaxis protein from Vibrio cholerae==
-
3C8C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=ALA:'>ALA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+B+501'>AC1</scene> and <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+A+501'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8C OCA].
+
<StructureSection load='3c8c' size='340' side='right'caption='[[3c8c]]' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8C FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8c OCA], [https://pdbe.org/3c8c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8c RCSB], [https://www.ebi.ac.uk/pdbsum/3c8c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8c ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3c8c TOPSAN]</span></td></tr>
-
[[Category: Burley, S K.]]
+
</table>
-
[[Category: Freeman, J.]]
+
== Evolutionary Conservation ==
-
[[Category: Hu, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
Check<jmol>
-
[[Category: Ozyurt, S.]]
+
<jmolCheckbox>
-
[[Category: Patskovsky, Y.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8c_consurf.spt"</scriptWhenChecked>
-
[[Category: Sauder, J M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Smith, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Wasserman, S R.]]
+
</jmolCheckbox>
-
[[Category: ALA]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c8c ConSurf].
-
[[Category: MG]]
+
<div style="clear:both"></div>
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: predicted chemotaxis protein]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomics]]
+
-
[[Category: uncharacterized protein]]
+
-
[[Category: unknown function]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:34 2008''
+
==See Also==
 +
*[[Chemotaxis protein 3D structures|Chemotaxis protein 3D structures]]
 +
*[[Methyl-accepting chemotaxis protein|Methyl-accepting chemotaxis protein]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Freeman J]]
 +
[[Category: Hu S]]
 +
[[Category: Ozyurt S]]
 +
[[Category: Patskovsky Y]]
 +
[[Category: Sauder JM]]
 +
[[Category: Smith D]]
 +
[[Category: Wasserman SR]]

Current revision

Crystal structure of Mcp_N and cache domains of methyl-accepting chemotaxis protein from Vibrio cholerae

PDB ID 3c8c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools