This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ccy
From Proteopedia
(Difference between revisions)
m (Protected "3ccy" [edit=sysop:move=sysop]) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3ccy.png|left|200px]] | ||
| - | + | ==Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822== | |
| - | + | <StructureSection load='3ccy' size='340' side='right'caption='[[3ccy]], [[Resolution|resolution]] 2.01Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3ccy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Borpa Borpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CCY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BPP2833 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257311 BORPA])</td></tr> |
| - | [[3ccy]] is a 1 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ccy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ccy OCA], [https://pdbe.org/3ccy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ccy RCSB], [https://www.ebi.ac.uk/pdbsum/3ccy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ccy ProSAT], [https://www.topsan.org/Proteins/MCSG/3ccy TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Clancy, S | + | == Evolutionary Conservation == |
| - | [[Category: Joachimiak, A | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Li, H | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: Tan, K | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3ccy_consurf.spt"</scriptWhenChecked> |
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ccy ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Borpa]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Clancy, S]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Li, H]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Tan, K]] | ||
[[Category: Apc88698]] | [[Category: Apc88698]] | ||
[[Category: Bordetella parapertussis 12822]] | [[Category: Bordetella parapertussis 12822]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Tetr]] | [[Category: Tetr]] | ||
[[Category: Transcription]] | [[Category: Transcription]] | ||
[[Category: Transcription regulation]] | [[Category: Transcription regulation]] | ||
[[Category: Transcription regulator]] | [[Category: Transcription regulator]] | ||
Current revision
Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822
| |||||||||||
