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3cdh

From Proteopedia

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[[Image:3cdh.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3==
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|PDB= 3cdh |SIZE=350|CAPTION= <scene name='initialview01'>3cdh</scene>, resolution 2.69&Aring;
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<StructureSection load='3cdh' size='340' side='right'caption='[[3cdh]], [[Resolution|resolution]] 2.69&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+201'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+202'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+203'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+A+204'>AC4</scene>, <scene name='pdbsite=AC5:So4+Binding+Site+For+Residue+B+205'>AC5</scene>, <scene name='pdbsite=AC6:So4+Binding+Site+For+Residue+A+206'>AC6</scene>, <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+A+207'>AC7</scene>, <scene name='pdbsite=AC8:Gol+Binding+Site+For+Residue+B+208'>AC8</scene> and <scene name='pdbsite=AC9:Gol+Binding+Site+For+Residue+B+209'>AC9</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[3cdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDH FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= SPO1453 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO1453 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246200 RUEPO])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdh OCA], [https://pdbe.org/3cdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdh RCSB], [https://www.ebi.ac.uk/pdbsum/3cdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdh ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdh TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdh OCA], [http://www.ebi.ac.uk/pdbsum/3cdh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cdh RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdh_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3CDH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDH OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Bacteria]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdh ConSurf].
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[[Category: Joachimiak, A.]]
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<div style="clear:both"></div>
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[[Category: Keigher, L.]]
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__TOC__
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[[Category: Kim, Y.]]
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</StructureSection>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Large Structures]]
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[[Category: Volkart, L.]]
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[[Category: Ruepo]]
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[[Category: dna-binding]]
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[[Category: Joachimiak, A]]
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[[Category: helix-turn-hleix]]
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[[Category: Keigher, L]]
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[[Category: marr]]
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[[Category: Kim, Y]]
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[[Category: mcsg]]
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[[Category: Structural genomic]]
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[[Category: midwest center for structural genomic]]
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[[Category: Volkart, L]]
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[[Category: protein structure initiative]]
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[[Category: Dna-binding]]
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[[Category: psi-2]]
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[[Category: Helix-turn-hleix]]
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[[Category: structural genomic]]
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[[Category: Marr]]
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[[Category: transcription regulation]]
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[[Category: Mcsg]]
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[[Category: transcription regulator]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: transcriptional regulator]]
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[[Category: Transcription regulation]]
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[[Category: Transcription regulator]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:31:46 2008''
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[[Category: Transcriptional regulator]]

Current revision

Crystal structure of the MarR family transcriptional regulator SPO1453 from Silicibacter pomeroyi DSS-3

PDB ID 3cdh

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