This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cpk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_3cpk", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (07:41, 2 February 2022) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cpk.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the Q7W7N7_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BeR31==
-
The line below this paragraph, containing "STRUCTURE_3cpk", creates the "Structure Box" on the page.
+
<StructureSection load='3cpk' size='340' side='right'caption='[[3cpk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3cpk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Borpa Borpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CPK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BPP2477 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257311 BORPA])</td></tr>
-
{{STRUCTURE_3cpk| PDB=3cpk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cpk OCA], [https://pdbe.org/3cpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cpk RCSB], [https://www.ebi.ac.uk/pdbsum/3cpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cpk ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of the Q7W7N7_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BeR31'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3CPK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CPK OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/3cpk_consurf.spt"</scriptWhenChecked>
-
[[Category: Bordetella parapertussis 12822]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Abashidze, M.]]
+
</jmolCheckbox>
-
[[Category: Acton, T B.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cpk ConSurf].
-
[[Category: Hunt, J F.]]
+
<div style="clear:both"></div>
-
[[Category: Janjua, H.]]
+
__TOC__
-
[[Category: Montelione, G T.]]
+
</StructureSection>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Borpa]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Large Structures]]
-
[[Category: Tong, L.]]
+
[[Category: Abashidze, M]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Acton, T B]]
-
[[Category: Xiao, R.]]
+
[[Category: Hunt, J F]]
-
[[Category: Zhao, L.]]
+
[[Category: Janjua, H]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Vorobiev, S M]]
 +
[[Category: Xiao, R]]
 +
[[Category: Zhao, L]]
[[Category: Ber31]]
[[Category: Ber31]]
[[Category: Bpp2477]]
[[Category: Bpp2477]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Q7w7n7_borpa]]
[[Category: Q7w7n7_borpa]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 16 23:16:54 2008''
 

Current revision

Crystal structure of the Q7W7N7_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BeR31

PDB ID 3cpk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cpk"
Personal tools