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3cqv
From Proteopedia
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==Crystal structure of Reverb beta in complex with heme== | ==Crystal structure of Reverb beta in complex with heme== | ||
| - | <StructureSection load='3cqv' size='340' side='right' caption='[[3cqv]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3cqv' size='340' side='right'caption='[[3cqv]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3cqv]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3cqv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CQV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NR1D2 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NR1D2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cqv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cqv OCA], [https://pdbe.org/3cqv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cqv RCSB], [https://www.ebi.ac.uk/pdbsum/3cqv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cqv ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/NR1D2_HUMAN NR1D2_HUMAN]] Binds to the sequences 5'-AATGTAGGTCA-3' and 5'-ATAACTAGGTCA-3'. Acts as a potent competitive repressor of ROR alpha function (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/3cqv_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/3cqv_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cqv ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3cqv" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Arrowsmith, C H | + | [[Category: Large Structures]] |
| - | [[Category: Botchkarev, A | + | [[Category: Arrowsmith, C H]] |
| - | [[Category: Bountra, C | + | [[Category: Botchkarev, A]] |
| - | [[Category: Cui, H | + | [[Category: Bountra, C]] |
| - | [[Category: Dong, A | + | [[Category: Cui, H]] |
| - | [[Category: Edwards, A | + | [[Category: Dong, A]] |
| - | [[Category: Krause, H | + | [[Category: Edwards, A]] |
| - | [[Category: Pardee, K I | + | [[Category: Krause, H]] |
| - | [[Category: Reinking, J | + | [[Category: Pardee, K I]] |
| - | [[Category: | + | [[Category: Reinking, J]] |
| - | [[Category: Savchenko, A | + | [[Category: Structural genomic]] |
| - | [[Category: Schuetz, A | + | [[Category: Savchenko, A]] |
| - | [[Category: Weigelt, J | + | [[Category: Schuetz, A]] |
| - | [[Category: Xu, X | + | [[Category: Weigelt, J]] |
| - | [[Category: Zhang, R | + | [[Category: Xu, X]] |
| + | [[Category: Zhang, R]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] | ||
[[Category: Heme]] | [[Category: Heme]] | ||
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[[Category: Reverb beta]] | [[Category: Reverb beta]] | ||
[[Category: Sgc]] | [[Category: Sgc]] | ||
| - | [[Category: Structural genomic]] | ||
| - | [[Category: Structural genomics consortium]] | ||
[[Category: Transcription]] | [[Category: Transcription]] | ||
[[Category: Transcription regulation]] | [[Category: Transcription regulation]] | ||
| + | [[Category: Zinc]] | ||
[[Category: Zinc-finger]] | [[Category: Zinc-finger]] | ||
Current revision
Crystal structure of Reverb beta in complex with heme
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Categories: Homo sapiens | Large Structures | Arrowsmith, C H | Botchkarev, A | Bountra, C | Cui, H | Dong, A | Edwards, A | Krause, H | Pardee, K I | Reinking, J | Structural genomic | Savchenko, A | Schuetz, A | Weigelt, J | Xu, X | Zhang, R | Dna-binding | Heme | Metal-binding | Nr1d2 | Nuclear receptor | Nucleus | Repressor | Reverb beta | Sgc | Transcription | Transcription regulation | Zinc | Zinc-finger

