This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cqy
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3cqy.jpg|left|200px]] | ||
| - | + | ==Crystal structure of a functionally unknown protein (SO_1313) from Shewanella oneidensis MR-1== | |
| - | + | <StructureSection load='3cqy' size='340' side='right'caption='[[3cqy]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3cqy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CQY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NP_716933, anmK, SO_1313 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cqy OCA], [https://pdbe.org/3cqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cqy RCSB], [https://www.ebi.ac.uk/pdbsum/3cqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cqy ProSAT], [https://www.topsan.org/Proteins/MCSG/3cqy TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [[https://www.uniprot.org/uniprot/ANMK_SHEON ANMK_SHEON]] Catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling. | |
| - | == | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: Edwards, A M | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/3cqy_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Evdokimova, E | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Joachimiak, A | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Kudritska, M | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cqy ConSurf]. |
| - | [[Category: Savchenko, A | + | <div style="clear:both"></div> |
| - | [[Category: Tan, K | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Sheon]] | ||
| + | [[Category: Edwards, A M]] | ||
| + | [[Category: Evdokimova, E]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kudritska, M]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Tan, K]] | ||
[[Category: Apc7501]] | [[Category: Apc7501]] | ||
[[Category: Atp-binding]] | [[Category: Atp-binding]] | ||
| Line 29: | Line 37: | ||
[[Category: Kinase]] | [[Category: Kinase]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Nucleotide-binding]] | [[Category: Nucleotide-binding]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Shewanella oneidensis mr-1]] | [[Category: Shewanella oneidensis mr-1]] | ||
[[Category: So_1313]] | [[Category: So_1313]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:41:55 2008'' | ||
Current revision
Crystal structure of a functionally unknown protein (SO_1313) from Shewanella oneidensis MR-1
| |||||||||||
Categories: Large Structures | Sheon | Edwards, A M | Evdokimova, E | Joachimiak, A | Kudritska, M | Structural genomic | Savchenko, A | Tan, K | Apc7501 | Atp-binding | Carbohydrate metabolism | Kinase | Mcsg | Nucleotide-binding | PSI, Protein structure initiative | Shewanella oneidensis mr-1 | So 1313 | Transferase

