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3d3q
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3d3q is ON HOLD Authors: Forouhar, F., Abashidze, M., Seetharaman, J., Mao, L., Xiao, R., Maglaqui, M., Lee, D., Everett, J.K., Acton, T.B., Monteli...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100== | |
| - | + | <StructureSection load='3d3q' size='340' side='right'caption='[[3d3q]], [[Resolution|resolution]] 2.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3d3q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staes Staes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3Q FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">miaA, SE_0981 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176280 STAES])</td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/tRNA_dimethylallyltransferase tRNA dimethylallyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.75 2.5.1.75] </span></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3q OCA], [https://pdbe.org/3d3q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3q RCSB], [https://www.ebi.ac.uk/pdbsum/3d3q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3q ProSAT], [https://www.topsan.org/Proteins/NESGC/3d3q TOPSAN]</span></td></tr> | |
| + | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/MIAA_STAES MIAA_STAES]] Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3q_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3q ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Staes]] | ||
| + | [[Category: TRNA dimethylallyltransferase]] | ||
| + | [[Category: Abashidze, M]] | ||
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Everett, J K]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Lee, D]] | ||
| + | [[Category: Maglaqui, M]] | ||
| + | [[Category: Mao, L]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Alpha-beta protein]] | ||
| + | [[Category: Atp-binding]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: Nucleotide-binding]] | ||
| + | [[Category: Nucleotidyltransferase]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Transferase]] | ||
| + | [[Category: Trna processing]] | ||
Current revision
Crystal structure of tRNA delta(2)-isopentenylpyrophosphate transferase (SE0981) from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR100
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Categories: Large Structures | Staes | TRNA dimethylallyltransferase | Abashidze, M | Acton, T B | Everett, J K | Forouhar, F | Hunt, J F | Lee, D | Maglaqui, M | Mao, L | Montelione, G T | Structural genomic | Seetharaman, J | Tong, L | Xiao, R | Alpha-beta protein | Atp-binding | Nesg | Nucleotide-binding | Nucleotidyltransferase | PSI, Protein structure initiative | Transferase | Trna processing
