This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d5n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:54, 2 February 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3d5n.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.==
-
The line below this paragraph, containing "STRUCTURE_3d5n", creates the "Structure Box" on the page.
+
<StructureSection load='3d5n' size='340' side='right'caption='[[3d5n]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3d5n]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D5N FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SSO2432 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091])</td></tr>
-
{{STRUCTURE_3d5n| PDB=3d5n | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d5n OCA], [https://pdbe.org/3d5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d5n RCSB], [https://www.ebi.ac.uk/pdbsum/3d5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d5n ProSAT], [https://www.topsan.org/Proteins/NESGC/3d5n TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3D5N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5N OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/3d5n_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Sulfolobus solfataricus]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Chen, Y.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d5n ConSurf].
-
[[Category: Foote, R E.]]
+
<div style="clear:both"></div>
-
[[Category: Hunt, J F.]]
+
__TOC__
-
[[Category: Janjua, H.]]
+
</StructureSection>
-
[[Category: Lee, D.]]
+
[[Category: Atcc 35091]]
-
[[Category: Maglaqui, M.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton, T B]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Chen, Y]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Foote, R E]]
-
[[Category: Tong, L.]]
+
[[Category: Hunt, J F]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Janjua, H]]
-
[[Category: Xiao, R.]]
+
[[Category: Lee, D]]
 +
[[Category: Maglaqui, M]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Vorobiev, S M]]
 +
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Q97w15]]
[[Category: Q97w15]]
[[Category: Ssr125]]
[[Category: Ssr125]]
-
[[Category: Structural genomic]]
 
[[Category: Sulso]]
[[Category: Sulso]]
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 10:49:50 2008''
 

Current revision

Crystal structure of the Q97W15_SULSO protein from Sulfolobus solfataricus. NESG target SsR125.

PDB ID 3d5n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools