This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dcp
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3dcp.png|left|200px]] | ||
| - | + | ==Crystal structure of the putative histidinol phosphatase hisK from Listeria monocytogenes. Northeast Structural Genomics Consortium target LmR141.== | |
| - | + | <StructureSection load='3dcp' size='340' side='right'caption='[[3dcp]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3dcp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._h7858 Listeria monocytogenes serotype 4b str. h7858]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2z4g|2z4g]], [[2yz5|2yz5]], [[2yxo|2yxo]]</div></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hisK, LMOh7858_0629 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=267410 Listeria monocytogenes serotype 4b str. H7858])</td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidinol-phosphatase Histidinol-phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.15 3.1.3.15] </span></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcp OCA], [https://pdbe.org/3dcp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcp RCSB], [https://www.ebi.ac.uk/pdbsum/3dcp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcp ProSAT], [https://www.topsan.org/Proteins/NESGC/3dcp TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | == | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcp_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dcp ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Histidinol-phosphatase]] | [[Category: Histidinol-phosphatase]] | ||
| - | [[Category: Listeria monocytogenes str. | + | [[Category: Large Structures]] |
| - | [[Category: Acton, T B | + | [[Category: Listeria monocytogenes serotype 4b str. h7858]] |
| - | [[Category: Baran, M C | + | [[Category: Acton, T B]] |
| - | [[Category: Foote, E L | + | [[Category: Baran, M C]] |
| - | [[Category: Hunt, J F | + | [[Category: Foote, E L]] |
| - | [[Category: Mao, L | + | [[Category: Hunt, J F]] |
| - | [[Category: Montelione, G T | + | [[Category: Mao, L]] |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | [[Category: Nair, R | + | [[Category: Structural genomic]] |
| - | [[Category: Rost, B | + | [[Category: Nair, R]] |
| - | [[Category: Seetharaman, J | + | [[Category: Rost, B]] |
| - | [[Category: Su, M | + | [[Category: Seetharaman, J]] |
| - | [[Category: Tong, L | + | [[Category: Su, M]] |
| - | [[Category: Vorobiev, S M | + | [[Category: Tong, L]] |
| - | [[Category: Xiao, R | + | [[Category: Vorobiev, S M]] |
| - | [[Category: Zhao, L | + | [[Category: Xiao, R]] |
| + | [[Category: Zhao, L]] | ||
[[Category: Hisk]] | [[Category: Hisk]] | ||
[[Category: Histidine biosynthesis]] | [[Category: Histidine biosynthesis]] | ||
| Line 38: | Line 47: | ||
[[Category: Lmr141]] | [[Category: Lmr141]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the putative histidinol phosphatase hisK from Listeria monocytogenes. Northeast Structural Genomics Consortium target LmR141.
| |||||||||||
Categories: Histidinol-phosphatase | Large Structures | Listeria monocytogenes serotype 4b str. h7858 | Acton, T B | Baran, M C | Foote, E L | Hunt, J F | Mao, L | Montelione, G T | Structural genomic | Nair, R | Rost, B | Seetharaman, J | Su, M | Tong, L | Vorobiev, S M | Xiao, R | Zhao, L | Hisk | Histidine biosynthesis | Histidinol phosphatase | Hydrolase | Lmr141 | Nesg | PSI, Protein structure initiative
