This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dfk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 9 February 2022) (edit) (undo)
 
Line 1: Line 1:
==The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2* bound to one of its products decanoic acid==
==The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2* bound to one of its products decanoic acid==
-
<StructureSection load='3dfk' size='340' side='right' caption='[[3dfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3dfk' size='340' side='right'caption='[[3dfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dfk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinoplanes_teichomyceticus"_parenti_et_al._1978 "actinoplanes teichomyceticus" parenti et al. 1978]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DFK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DFK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dfk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinoplanes_teichomyceticus"_parenti_et_al._1978 "actinoplanes teichomyceticus" parenti et al. 1978]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DFK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dff|3dff]], [[3dfi|3dfi]], [[3dfm|3dfm]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dff|3dff]], [[3dfi|3dfi]], [[3dfm|3dfm]]</div></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tcp14 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1867 "Actinoplanes teichomyceticus" Parenti et al. 1978])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tcp14 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1867 "Actinoplanes teichomyceticus" Parenti et al. 1978])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dfk OCA], [http://pdbe.org/3dfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dfk RCSB], [http://www.ebi.ac.uk/pdbsum/3dfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dfk ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dfk OCA], [https://pdbe.org/3dfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dfk RCSB], [https://www.ebi.ac.uk/pdbsum/3dfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dfk ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 34: Line 34:
</StructureSection>
</StructureSection>
[[Category: Actinoplanes teichomyceticus parenti et al. 1978]]
[[Category: Actinoplanes teichomyceticus parenti et al. 1978]]
 +
[[Category: Large Structures]]
[[Category: Brunzelle, J S]]
[[Category: Brunzelle, J S]]
[[Category: Nair, S K]]
[[Category: Nair, S K]]

Current revision

The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2* bound to one of its products decanoic acid

PDB ID 3dfk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools