This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dmy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:03, 9 February 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of a predicated acyl-CoA synthetase from E.coli==
==Crystal Structure of a predicated acyl-CoA synthetase from E.coli==
-
<StructureSection load='3dmy' size='340' side='right' caption='[[3dmy]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
+
<StructureSection load='3dmy' size='340' side='right'caption='[[3dmy]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DMY FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMY FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmy OCA], [https://pdbe.org/3dmy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmy RCSB], [https://www.ebi.ac.uk/pdbsum/3dmy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dmy TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fdrA, ylbD, b0518, JW0506 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dmy RCSB], [http://www.ebi.ac.uk/pdbsum/3dmy PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dmy TOPSAN]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/FDRA_ECOLI FDRA_ECOLI]] Not known; multicopy suppressor of dominant negative ftsH mutations.
 
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmy_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmy_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmy ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Escherichia coli]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Sugadev R]]
-
[[Category: Sugadev, R]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S]]
+
-
[[Category: Membrane]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Predicted actyl-coa synthetase]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal Structure of a predicated acyl-CoA synthetase from E.coli

PDB ID 3dmy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools