This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dmy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:03, 9 February 2022) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dmy.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of a predicated acyl-CoA synthetase from E.coli==
-
The line below this paragraph, containing "STRUCTURE_3dmy", creates the "Structure Box" on the page.
+
<StructureSection load='3dmy' size='340' side='right'caption='[[3dmy]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmy OCA], [https://pdbe.org/3dmy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmy RCSB], [https://www.ebi.ac.uk/pdbsum/3dmy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dmy TOPSAN]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_3dmy| PDB=3dmy | SCENE= }}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
===Crystal Structure of a predicated acyl-CoA synthetase from E.coli===
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmy_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3DMY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMY OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Escherichia coli k12]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmy ConSurf].
-
[[Category: Burley, S K.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Sugadev, R.]]
+
</StructureSection>
-
[[Category: Swaminathan, S.]]
+
[[Category: Large Structures]]
-
[[Category: 10300a]]
+
[[Category: Burley SK]]
-
[[Category: Membrane]]
+
[[Category: Sugadev R]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Swaminathan S]]
-
[[Category: Nysgrc]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Predicted actyl-coa synthetase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 6 13:06:42 2008''
+

Current revision

Crystal Structure of a predicated acyl-CoA synthetase from E.coli

PDB ID 3dmy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dmy"
Personal tools