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3dpj

From Proteopedia

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{{Seed}}
 
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[[Image:3dpj.png|left|200px]]
 
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<!--
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==The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS==
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The line below this paragraph, containing "STRUCTURE_3dpj", creates the "Structure Box" on the page.
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<StructureSection load='3dpj' size='340' side='right'caption='[[3dpj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dpj]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DPJ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
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-->
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3dpj| PDB=3dpj | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO1902 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpj OCA], [https://pdbe.org/3dpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dpj RCSB], [https://www.ebi.ac.uk/pdbsum/3dpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpj ProSAT], [https://www.topsan.org/Proteins/MCSG/3dpj TOPSAN]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpj_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dpj ConSurf].
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<div style="clear:both"></div>
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===The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS===
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==See Also==
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*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3DPJ is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Silicibacter_pomeroyi Silicibacter pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPJ OCA].
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[[Category: Atcc 700808]]
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[[Category: Silicibacter pomeroyi]]
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[[Category: Large Structures]]
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[[Category: Freeman, L.]]
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[[Category: Freeman, L]]
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[[Category: Joachimiak, A.]]
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[[Category: Joachimiak, A]]
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[[Category: Li, H.]]
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[[Category: Li, H]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Structural genomic]]
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[[Category: Tan, K.]]
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[[Category: Tan, K]]
[[Category: Apc88616]]
[[Category: Apc88616]]
[[Category: Dna binding protein]]
[[Category: Dna binding protein]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Silicibacter pomeroyi dss]]
[[Category: Silicibacter pomeroyi dss]]
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[[Category: Structural genomic]]
 
[[Category: Tetr]]
[[Category: Tetr]]
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:30:22 2008''
 

Current revision

The crystal structure of a TetR transcription regulator from Silicibacter pomeroyi DSS

PDB ID 3dpj

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