This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dxi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 9 February 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
 +
==Crystal structure of the N-terminal domain of a putative aldolase (BVU_2661) from Bacteroides vulgatus==
==Crystal structure of the N-terminal domain of a putative aldolase (BVU_2661) from Bacteroides vulgatus==
-
<StructureSection load='3dxi' size='340' side='right' caption='[[3dxi]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
+
<StructureSection load='3dxi' size='340' side='right'caption='[[3dxi]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dxi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacv8 Bacv8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXI FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXI FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxi OCA], [https://pdbe.org/3dxi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxi RCSB], [https://www.ebi.ac.uk/pdbsum/3dxi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxi ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dxi TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BVU_2661 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=435590 BACV8])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxi OCA], [http://pdbe.org/3dxi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dxi RCSB], [http://www.ebi.ac.uk/pdbsum/3dxi PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dxi TOPSAN]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 10:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxi_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxi_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 19: Line 18:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacv8]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Eswaramoorthy, S]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: Structural genomic]]
+
[[Category: Pabalan AA]]
-
[[Category: Pabalan, A A]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Tim barrel]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of the N-terminal domain of a putative aldolase (BVU_2661) from Bacteroides vulgatus

PDB ID 3dxi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools