This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3edn
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3edn is ON HOLD Authors: Anderson, S.M., Brunzelle, J.S., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectio...) |
|||
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of the Bacillus anthracis phenazine biosynthesis protein, PhzF family== | |
| - | + | <StructureSection load='3edn' size='340' side='right'caption='[[3edn]], [[Resolution|resolution]] 1.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3edn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EDN FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS3216, BA_3469, GBAA3469 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr> | |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3edn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3edn OCA], [https://pdbe.org/3edn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3edn RCSB], [https://www.ebi.ac.uk/pdbsum/3edn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3edn ProSAT], [https://www.topsan.org/Proteins/CSGID/3edn TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/3edn_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3edn ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Anderson, S M]] | ||
| + | [[Category: Anderson, W F]] | ||
| + | [[Category: Brunzelle, J S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Onopriyenko, O]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Alpha and beta protein class]] | ||
| + | [[Category: Biosynthetic protein]] | ||
| + | [[Category: Csgid]] | ||
| + | [[Category: Diaminopimelate epimerase-like fold]] | ||
Current revision
Crystal structure of the Bacillus anthracis phenazine biosynthesis protein, PhzF family
| |||||||||||
