This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fiw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 2 March 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fiw.jpg|left|200px]]
 
-
<!--
+
==Structure of SCO0253, a Tetr-family transcriptional regulator from Streptomyces coelicolor==
-
The line below this paragraph, containing "STRUCTURE_3fiw", creates the "Structure Box" on the page.
+
<StructureSection load='3fiw' size='340' side='right'caption='[[3fiw]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fiw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3fiw| PDB=3fiw | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCJ9A.32, SCO0253 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fiw OCA], [https://pdbe.org/3fiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fiw RCSB], [https://www.ebi.ac.uk/pdbsum/3fiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fiw ProSAT], [https://www.topsan.org/Proteins/MCSG/3fiw TOPSAN]</span></td></tr>
-
===Structure of SCO0253, a Tetr-family transcriptional regulator from Streptomyces coelicolor===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3FIW is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIW OCA].
+
<jmolCheckbox>
-
[[Category: Streptomyces coelicolor]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fiw_consurf.spt"</scriptWhenChecked>
-
[[Category: Chang, C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Gu, J.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fiw ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Savchenko, A.]]
+
__TOC__
-
[[Category: Singer, A U.]]
+
</StructureSection>
-
[[Category: Xu, X.]]
+
[[Category: Large Structures]]
 +
[[Category: Chang, C]]
 +
[[Category: Edwards, A M]]
 +
[[Category: Gu, J]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Singer, A U]]
 +
[[Category: Xu, X]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Tetr-family transcriptional regulator streptomyce]]
[[Category: Tetr-family transcriptional regulator streptomyce]]
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 14 13:36:32 2009''
 

Current revision

Structure of SCO0253, a Tetr-family transcriptional regulator from Streptomyces coelicolor

PDB ID 3fiw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools