3fyn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:51, 9 March 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fyn.jpg|left|200px]]
 
-
<!--
+
==Crystal structure from the mobile metagenome of Cole Harbour Salt Marsh: Integron Cassette Protein HFX_CASS3==
-
The line below this paragraph, containing "STRUCTURE_3fyn", creates the "Structure Box" on the page.
+
<StructureSection load='3fyn' size='340' side='right'caption='[[3fyn]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fyn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Uncultivated_bacterium Uncultivated bacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FYN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3fyn| PDB=3fyn | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=77133 uncultivated bacterium])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fyn OCA], [https://pdbe.org/3fyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fyn RCSB], [https://www.ebi.ac.uk/pdbsum/3fyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fyn ProSAT], [https://www.topsan.org/Proteins/MCSG/3fyn TOPSAN]</span></td></tr>
-
===Crystal structure from the mobile metagenome of Cole Harbour Salt Marsh: Integron Cassette Protein HFX_CASS3===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3FYN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Uncultured_bacterium Uncultured bacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYN OCA].
+
<jmolCheckbox>
-
[[Category: Uncultured bacterium]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fyn_consurf.spt"</scriptWhenChecked>
-
[[Category: Curmi, P M.G.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Deshpande, C N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Doolittle, W F.]]
+
</jmolCheckbox>
-
[[Category: Edwards, A M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fyn ConSurf].
-
[[Category: Evdokimova, E.]]
+
<div style="clear:both"></div>
-
[[Category: Harrop, S J.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: Koenig, J E.]]
+
[[Category: Large Structures]]
-
[[Category: Kudritska, M.]]
+
[[Category: Uncultivated bacterium]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Curmi, P M.G]]
-
[[Category: Mabbutt, B C.]]
+
[[Category: Deshpande, C N]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Doolittle, W F]]
-
[[Category: Savchenko, A.]]
+
[[Category: Edwards, A M]]
-
[[Category: Stokes, H W.]]
+
[[Category: Evdokimova, E]]
-
[[Category: Sureshan, V.]]
+
[[Category: Harrop, S J]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Koenig, J E]]
 +
[[Category: Kudritska, M]]
 +
[[Category: Structural genomic]]
 +
[[Category: Mabbutt, B C]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Stokes, H W]]
 +
[[Category: Sureshan, V]]
[[Category: Integron cassette protein]]
[[Category: Integron cassette protein]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Mobile metagenome]]
[[Category: Mobile metagenome]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 12:44:54 2009''
 

Current revision

Crystal structure from the mobile metagenome of Cole Harbour Salt Marsh: Integron Cassette Protein HFX_CASS3

PDB ID 3fyn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools