This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3g74

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 9 March 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a functionally unknown protein from Eubacterium ventriosum ATCC 27560==
==Crystal structure of a functionally unknown protein from Eubacterium ventriosum ATCC 27560==
-
<StructureSection load='3g74' size='340' side='right' caption='[[3g74]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
+
<StructureSection load='3g74' size='340' side='right'caption='[[3g74]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3g74]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Eubacterium_ventriosum_atcc_27560 Eubacterium ventriosum atcc 27560]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G74 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3G74 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3g74]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Eubacterium_ventriosum_atcc_27560 Eubacterium ventriosum atcc 27560]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G74 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G74 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EUBVEN_02336 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=411463 Eubacterium ventriosum ATCC 27560])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EUBVEN_02336 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=411463 Eubacterium ventriosum ATCC 27560])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3g74 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g74 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3g74 RCSB], [http://www.ebi.ac.uk/pdbsum/3g74 PDBsum], [http://www.topsan.org/Proteins/MCSG/3g74 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g74 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g74 OCA], [https://pdbe.org/3g74 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g74 RCSB], [https://www.ebi.ac.uk/pdbsum/3g74 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g74 ProSAT], [https://www.topsan.org/Proteins/MCSG/3g74 TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 13:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g7/3g74_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g7/3g74_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g74 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Eubacterium ventriosum atcc 27560]]
[[Category: Eubacterium ventriosum atcc 27560]]
 +
[[Category: Large Structures]]
[[Category: Freeman, L]]
[[Category: Freeman, L]]
[[Category: Joachimiak, A]]
[[Category: Joachimiak, A]]

Current revision

Crystal structure of a functionally unknown protein from Eubacterium ventriosum ATCC 27560

PDB ID 3g74

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools