This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gby

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3gby" [edit=sysop:move=sysop])
Current revision (08:01, 9 March 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gby.png|left|200px]]
 
-
{{STRUCTURE_3gby| PDB=3gby | SCENE= }}
+
==Crystal structure of a protein with unknown function CT1051 from Chlorobium tepidum==
-
 
+
<StructureSection load='3gby' size='340' side='right'caption='[[3gby]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
-
===Crystal structure of a protein with unknown function CT1051 from Chlorobium tepidum===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gby]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlte Chlte]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GBY FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3gby]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlorobium_tepidum_tls Chlorobium tepidum tls]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GBY OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CT1051 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194439 CHLTE])</td></tr>
-
[[Category: Chlorobium tepidum tls]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gby OCA], [https://pdbe.org/3gby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gby RCSB], [https://www.ebi.ac.uk/pdbsum/3gby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gby ProSAT], [https://www.topsan.org/Proteins/MCSG/3gby TOPSAN]</span></td></tr>
-
[[Category: Chang, C.]]
+
</table>
-
[[Category: Clancy, S.]]
+
== Evolutionary Conservation ==
-
[[Category: Fan, Y.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joachimiak, A.]]
+
Check<jmol>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<jmolCheckbox>
-
[[Category: Sather, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/3gby_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gby ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Chlte]]
 +
[[Category: Large Structures]]
 +
[[Category: Chang, C]]
 +
[[Category: Clancy, S]]
 +
[[Category: Fan, Y]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Sather, A]]
[[Category: Cbs domain]]
[[Category: Cbs domain]]
[[Category: Chlorobium tepidum]]
[[Category: Chlorobium tepidum]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal structure of a protein with unknown function CT1051 from Chlorobium tepidum

PDB ID 3gby

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools