This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gnj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:49, 16 March 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gnj.png|left|200px]]
 
-
{{STRUCTURE_3gnj| PDB=3gnj | SCENE= }}
+
==The crystal structure of a thioredoxin-related protein from Desulfitobacterium hafniense DCB==
-
 
+
<StructureSection load='3gnj' size='340' side='right'caption='[[3gnj]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-
===The crystal structure of a thioredoxin-related protein from Desulfitobacterium hafniense DCB===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gnj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Deshd Deshd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GNJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GNJ FirstGlance]. <br>
-
 
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Desulfitobacterium hafniense, Dhaf_4889 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272564 DESHD])</td></tr>
-
[[3gnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_dcb-2 Desulfitobacterium hafniense dcb-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GNJ OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gnj OCA], [https://pdbe.org/3gnj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gnj RCSB], [https://www.ebi.ac.uk/pdbsum/3gnj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gnj ProSAT], [https://www.topsan.org/Proteins/MCSG/3gnj TOPSAN]</span></td></tr>
-
[[Category: Desulfitobacterium hafniense dcb-2]]
+
</table>
-
[[Category: Babnigg, G.]]
+
== Evolutionary Conservation ==
-
[[Category: Gu, M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joachimiak, A.]]
+
Check<jmol>
-
[[Category: Kerfeld, C.]]
+
<jmolCheckbox>
-
[[Category: Kinney, J N.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/3gnj_consurf.spt"</scriptWhenChecked>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Tan, K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Volkart, L.]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gnj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Deshd]]
 +
[[Category: Large Structures]]
 +
[[Category: Babnigg, G]]
 +
[[Category: Gu, M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kerfeld, C]]
 +
[[Category: Kinney, J N]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
 +
[[Category: Volkart, L]]
[[Category: Apc92103]]
[[Category: Apc92103]]
[[Category: Desulfitobacterium hafniense dcb]]
[[Category: Desulfitobacterium hafniense dcb]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Thioredoxin]]
[[Category: Thioredoxin]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

The crystal structure of a thioredoxin-related protein from Desulfitobacterium hafniense DCB

PDB ID 3gnj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools