This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3gvz
From Proteopedia
(Difference between revisions)
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3gvz", creates the "Structure Box" on the page. You may change the PDB parameter (which se...) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3gvz.jpg|left|200px]] | ||
| - | + | ==Crystal structure of the protein CV2077 from Chromobacterium violaceum. Northeast Structural Genomics Consortium Target CvR62== | |
| - | + | <StructureSection load='3gvz' size='340' side='right'caption='[[3gvz]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3gvz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chrvo Chrvo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVZ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CV_2077 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243365 CHRVO])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvz OCA], [https://pdbe.org/3gvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvz RCSB], [https://www.ebi.ac.uk/pdbsum/3gvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvz ProSAT], [https://www.topsan.org/Proteins/NESGC/3gvz TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvz_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Acton, T B | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Chen, C X | + | </jmolCheckbox> |
| - | [[Category: Cunningham, K | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gvz ConSurf]. |
| - | [[Category: Everett, J K | + | <div style="clear:both"></div> |
| - | [[Category: Fang, F | + | __TOC__ |
| - | [[Category: Forouhar, F | + | </StructureSection> |
| - | [[Category: Hunt, J F | + | [[Category: Chrvo]] |
| - | [[Category: Maglaqui, M | + | [[Category: Large Structures]] |
| - | [[Category: Montelione, G T | + | [[Category: Acton, T B]] |
| - | [[Category: | + | [[Category: Chen, C X]] |
| - | [[Category: Nair, R | + | [[Category: Cunningham, K]] |
| - | [[Category: Neely, H | + | [[Category: Everett, J K]] |
| - | [[Category: Owens, L | + | [[Category: Fang, F]] |
| - | [[Category: Rost, B | + | [[Category: Forouhar, F]] |
| - | [[Category: Seetharaman, J | + | [[Category: Hunt, J F]] |
| - | [[Category: Tong, L | + | [[Category: Maglaqui, M]] |
| - | [[Category: Xiao, R | + | [[Category: Montelione, G T]] |
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
| + | [[Category: Neely, H]] | ||
| + | [[Category: Owens, L]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:38:36 2009'' | ||
Current revision
Crystal structure of the protein CV2077 from Chromobacterium violaceum. Northeast Structural Genomics Consortium Target CvR62
| |||||||||||
Categories: Chrvo | Large Structures | Acton, T B | Chen, C X | Cunningham, K | Everett, J K | Fang, F | Forouhar, F | Hunt, J F | Maglaqui, M | Montelione, G T | Structural genomic | Nair, R | Neely, H | Owens, L | Rost, B | Seetharaman, J | Tong, L | Xiao, R | Alpha-beta protein | Nesg | PSI, Protein structure initiative | Unknown function

