This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3h6e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 16 March 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The crystal structure of a carbohydrate kinase from Novosphingobium aromaticivorans==
==The crystal structure of a carbohydrate kinase from Novosphingobium aromaticivorans==
-
<StructureSection load='3h6e' size='340' side='right' caption='[[3h6e]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='3h6e' size='340' side='right'caption='[[3h6e]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3h6e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H6E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3H6E FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H6E FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h6e OCA], [https://pdbe.org/3h6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h6e RCSB], [https://www.ebi.ac.uk/pdbsum/3h6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h6e ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3h6e TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Saro_1051 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 Novosphingobium aromaticivorans DSM 12444])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3h6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h6e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3h6e RCSB], [http://www.ebi.ac.uk/pdbsum/3h6e PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3h6e TOPSAN]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 10:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h6/3h6e_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h6/3h6e_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h6e ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Novosphingobium aromaticivorans dsm 12444]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S]]
+
[[Category: Zhang Z]]
-
[[Category: Zhang, Z]]
+
-
[[Category: Carbohydrate kinase]]
+
-
[[Category: Kinase]]
+
-
[[Category: Novosphingobium aromaticivoran]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Sgx]]
+
-
[[Category: Strain dsm 12444]]
+
-
[[Category: Transferase]]
+

Current revision

The crystal structure of a carbohydrate kinase from Novosphingobium aromaticivorans

PDB ID 3h6e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools