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3hdj
From Proteopedia
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| - | {{Seed}} | ||
| - | [[Image:3hdj.jpg|left|200px]] | ||
| - | + | ==The crystal structure of probable ornithine cyclodeaminase from Bordetella pertussis Tohama I== | |
| - | + | <StructureSection load='3hdj' size='340' side='right'caption='[[3hdj]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3hdj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_tussis-convulsivae"_lehmann_and_neumann_1927 "bacterium tussis-convulsivae" lehmann and neumann 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HDJ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bordetella pertussis, BP0354 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 "Bacterium tussis-convulsivae" Lehmann and Neumann 1927])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hdj OCA], [https://pdbe.org/3hdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hdj RCSB], [https://www.ebi.ac.uk/pdbsum/3hdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hdj ProSAT], [https://www.topsan.org/Proteins/MCSG/3hdj TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hd/3hdj_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Clancy, S | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Joachimiak, A | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Sather, A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hdj ConSurf]. |
| - | [[Category: Tan, K | + | <div style="clear:both"></div> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacterium tussis-convulsivae lehmann and neumann 1927]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Clancy, S]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Sather, A]] | ||
| + | [[Category: Tan, K]] | ||
[[Category: Apc62486]] | [[Category: Apc62486]] | ||
[[Category: Bordetella pertussis tohama i]] | [[Category: Bordetella pertussis tohama i]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Ornithine cyclodeaminase]] | [[Category: Ornithine cyclodeaminase]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 20 18:09:02 2009'' | ||
Current revision
The crystal structure of probable ornithine cyclodeaminase from Bordetella pertussis Tohama I
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