This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3hnm
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3hnm.jpg|left|200px]] | ||
| - | + | ==Crystal Structure of Protein BT_411 (putative chitobiase, fragment 298-461) from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR319D== | |
| - | + | <StructureSection load='3hnm' size='340' side='right'caption='[[3hnm]], [[Resolution|resolution]] 3.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3hnm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HNM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ggl|3ggl]]</div></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_0441 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnm OCA], [https://pdbe.org/3hnm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hnm RCSB], [https://www.ebi.ac.uk/pdbsum/3hnm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnm ProSAT], [https://www.topsan.org/Proteins/NESGC/3hnm TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: Abashidze, M | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnm_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Acton, T B | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Ciccosanti, C | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Everett, J K | + | </jmolCheckbox> |
| - | [[Category: Foote, E L | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hnm ConSurf]. |
| - | [[Category: Hunt, J F | + | <div style="clear:both"></div> |
| - | [[Category: Kuzin, A | + | __TOC__ |
| - | [[Category: Lee, D | + | </StructureSection> |
| - | [[Category: Montelione, G T | + | [[Category: Bacillus thetaiotaomicron distaso 1912]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Nair, R | + | [[Category: Abashidze, M]] |
| - | [[Category: Rost, B | + | [[Category: Acton, T B]] |
| - | [[Category: Sahdev, S | + | [[Category: Ciccosanti, C]] |
| - | [[Category: Seetharaman, J | + | [[Category: Everett, J K]] |
| - | [[Category: Tong, L | + | [[Category: Foote, E L]] |
| - | [[Category: Xiao, R | + | [[Category: Hunt, J F]] |
| + | [[Category: Kuzin, A]] | ||
| + | [[Category: Lee, D]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Sahdev, S]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
[[Category: Btr319d bt_411]] | [[Category: Btr319d bt_411]] | ||
| - | [[Category: Crystal structure]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 8 12:45:42 2009'' | ||
Current revision
Crystal Structure of Protein BT_411 (putative chitobiase, fragment 298-461) from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR319D
| |||||||||||
Categories: Bacillus thetaiotaomicron distaso 1912 | Large Structures | Abashidze, M | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Hunt, J F | Kuzin, A | Lee, D | Montelione, G T | Structural genomic | Nair, R | Rost, B | Sahdev, S | Seetharaman, J | Tong, L | Xiao, R | Btr319d bt 411 | Nesg | PSI, Protein structure initiative | Unknown function
