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3icc
From Proteopedia
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| - | [[Image:3icc.png|left|200px]] | ||
| - | + | ==Crystal structure of a putative 3-oxoacyl-(acyl carrier protein) reductase from Bacillus anthracis at 1.87 A resolution== | |
| + | <StructureSection load='3icc' size='340' side='right'caption='[[3icc]], [[Resolution|resolution]] 1.87Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3icc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ICC FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS1712, BA_1847, GBAA1847, GBAA_1847 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3icc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3icc OCA], [https://pdbe.org/3icc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3icc RCSB], [https://www.ebi.ac.uk/pdbsum/3icc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3icc ProSAT], [https://www.topsan.org/Proteins/CSGID/3icc TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3icc_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3icc ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The crystal structure of a short-chain dehydrogenase/reductase from Bacillus anthracis strain `Ames Ancestor' complexed with NADP has been determined and refined to 1.87 A resolution. The structure of the enzyme consists of a Rossmann fold composed of seven parallel beta-strands sandwiched by three alpha-helices on each side. An NADP molecule from an endogenous source is bound in the conserved binding pocket in the syn conformation. The loop region responsible for binding another substrate forms two perpendicular short helices connected by a sharp turn. | ||
| - | + | Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis.,Hou J, Wojciechowska K, Zheng H, Chruszcz M, Cooper DR, Cymborowski M, Skarina T, Gordon E, Luo H, Savchenko A, Minor W Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jun 1;68(Pt 6):632-7. Epub, 2012 May 24. PMID:22684058<ref>PMID:22684058</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | == | + | <div class="pdbe-citations 3icc" style="background-color:#fffaf0;"></div> |
| - | [[ | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: Anderson, W | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: Chruszcz, M | + | [[Category: Bacillus anthracis ames ancestor]] |
| - | [[Category: Cymborowski, M | + | [[Category: Large Structures]] |
| - | [[Category: Edwards, A M | + | [[Category: Anderson, W]] |
| - | [[Category: Gordon, S | + | [[Category: Structural genomic]] |
| - | [[Category: Hou, J | + | [[Category: Chruszcz, M]] |
| - | [[Category: Luo, H B | + | [[Category: Cymborowski, M]] |
| - | [[Category: Minor, W | + | [[Category: Edwards, A M]] |
| - | [[Category: Savchenko, A | + | [[Category: Gordon, S]] |
| - | [[Category: Skarina, T | + | [[Category: Hou, J]] |
| - | [[Category: Zheng, H | + | [[Category: Luo, H B]] |
| - | + | [[Category: Minor, W]] | |
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Skarina, T]] | ||
| + | [[Category: Zheng, H]] | ||
[[Category: Csgid]] | [[Category: Csgid]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
Crystal structure of a putative 3-oxoacyl-(acyl carrier protein) reductase from Bacillus anthracis at 1.87 A resolution
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