This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ic4
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3ic4| PDB=3ic4 | SCENE= }} | ||
| - | ===The crystal structure of the glutaredoxin(grx-1) from Archaeoglobus fulgidus=== | ||
| - | == | + | ==The crystal structure of the glutaredoxin(grx-1) from Archaeoglobus fulgidus== |
| - | [[3ic4]] is a 1 chain structure with sequence from [ | + | <StructureSection load='3ic4' size='340' side='right'caption='[[3ic4]], [[Resolution|resolution]] 1.70Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Cui, H | + | <table><tr><td colspan='2'>[[3ic4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arcfl Arcfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IC4 FirstGlance]. <br> |
| - | [[Category: Edwards, A | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [[Category: Joachimiak, A | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_1536, GI:2649025 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 ARCFL])</td></tr> |
| - | [[Category: Savchenko, A | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ic4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ic4 OCA], [https://pdbe.org/3ic4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ic4 RCSB], [https://www.ebi.ac.uk/pdbsum/3ic4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ic4 ProSAT]</span></td></tr> |
| - | [[Category: Xu, X | + | </table> |
| - | [[Category: Zhang, R | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3ic4_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ic4 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Arcfl]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cui, H]] | ||
| + | [[Category: Edwards, A]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Xu, X]] | ||
| + | [[Category: Zhang, R]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
Current revision
The crystal structure of the glutaredoxin(grx-1) from Archaeoglobus fulgidus
| |||||||||||

