This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3igr
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3igr| PDB=3igr | SCENE= }} | ||
| - | ===The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A=== | ||
| - | == | + | ==The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A== |
| - | [[3igr]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3igr' size='340' side='right'caption='[[3igr]], [[Resolution|resolution]] 2.00Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3igr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aliivibrio_fischeri_es114 Aliivibrio fischeri es114]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGR FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rimJ, VFA0750, VF_A0750 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=312309 Aliivibrio fischeri ES114])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribosomal-protein-alanine_N-acetyltransferase Ribosomal-protein-alanine N-acetyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.128 2.3.1.128] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3igr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igr OCA], [https://pdbe.org/3igr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3igr RCSB], [https://www.ebi.ac.uk/pdbsum/3igr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3igr ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ig/3igr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3igr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aliivibrio fischeri es114]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Ribosomal-protein-alanine N-acetyltransferase]] | [[Category: Ribosomal-protein-alanine N-acetyltransferase]] | ||
| - | + | [[Category: Joachimiak, A]] | |
| - | [[Category: Joachimiak, A | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Sather, A]] |
| - | [[Category: Sather, A | + | [[Category: Shackelford, G]] |
| - | [[Category: Shackelford, G | + | [[Category: Stein, A J]] |
| - | [[Category: Stein, A J | + | |
[[Category: Acetyltransferase]] | [[Category: Acetyltransferase]] | ||
[[Category: Acyltransferase]] | [[Category: Acyltransferase]] | ||
| Line 16: | Line 35: | ||
[[Category: Fischeri]] | [[Category: Fischeri]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Ribosomal-protein]] | [[Category: Ribosomal-protein]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
[[Category: Vibrio]] | [[Category: Vibrio]] | ||
Current revision
The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A
| |||||||||||
Categories: Aliivibrio fischeri es114 | Large Structures | Ribosomal-protein-alanine N-acetyltransferase | Joachimiak, A | Structural genomic | Sather, A | Shackelford, G | Stein, A J | Acetyltransferase | Acyltransferase | Alanine | Fischeri | Mcsg | PSI, Protein structure initiative | Ribosomal-protein | Transferase | Vibrio
