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3ihk
From Proteopedia
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==Crystal Structure of thiamin pyrophosphokinase from S.mutans, Northeast Structural Genomics Consortium Target SmR83== | ==Crystal Structure of thiamin pyrophosphokinase from S.mutans, Northeast Structural Genomics Consortium Target SmR83== | ||
| - | <StructureSection load='3ihk' size='340' side='right' caption='[[3ihk]], [[Resolution|resolution]] 3.00Å' scene=''> | + | <StructureSection load='3ihk' size='340' side='right'caption='[[3ihk]], [[Resolution|resolution]] 3.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3ihk]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3ihk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_25175 Atcc 25175]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IHK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IHK FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SMU_353 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SMU_353 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1309 ATCC 25175])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ihk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ihk OCA], [https://pdbe.org/3ihk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ihk RCSB], [https://www.ebi.ac.uk/pdbsum/3ihk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ihk ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ih/3ihk_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ih/3ihk_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ihk ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Atcc 25175]] |
| + | [[Category: Large Structures]] | ||
[[Category: Abashidze, M]] | [[Category: Abashidze, M]] | ||
[[Category: Acton, T B]] | [[Category: Acton, T B]] | ||
| - | [[Category: Ciccosanti,C]] | + | [[Category: Ciccosanti, C]] |
[[Category: Everett, J K]] | [[Category: Everett, J K]] | ||
| - | [[Category: Foote,E L]] | + | [[Category: Foote, E L]] |
| - | [[Category: Hunt,J F]] | + | [[Category: Hunt, J F]] |
| - | [[Category: Kuzin,A]] | + | [[Category: Kuzin, A]] |
| - | [[Category: Maglaqui,M]] | + | [[Category: Maglaqui, M]] |
| - | [[Category: Mao,M]] | + | [[Category: Mao, M]] |
[[Category: Montelione, G T]] | [[Category: Montelione, G T]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
[[Category: Nair, R]] | [[Category: Nair, R]] | ||
[[Category: Rost, B]] | [[Category: Rost, B]] | ||
| - | [[Category: Seetharaman,J]] | + | [[Category: Seetharaman, J]] |
| - | [[Category: Tong,L]] | + | [[Category: Tong, L]] |
| - | [[Category: Vorobiev,S]] | + | [[Category: Vorobiev, S]] |
| - | [[Category: Xiao,R]] | + | [[Category: Xiao, R]] |
| - | [[Category: Zhao,L]] | + | [[Category: Zhao, L]] |
[[Category: Nesg]] | [[Category: Nesg]] | ||
[[Category: PSI, Protein structure initiative]] | [[Category: PSI, Protein structure initiative]] | ||
Current revision
Crystal Structure of thiamin pyrophosphokinase from S.mutans, Northeast Structural Genomics Consortium Target SmR83
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Categories: Atcc 25175 | Large Structures | Abashidze, M | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Hunt, J F | Kuzin, A | Maglaqui, M | Mao, M | Montelione, G T | Structural genomic | Nair, R | Rost, B | Seetharaman, J | Tong, L | Vorobiev, S | Xiao, R | Zhao, L | Nesg | PSI, Protein structure initiative | Q8dvv9 | Smr83 | Thiamin pyrophosphokinase | Transferase
