This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ikb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ikb" [edit=sysop:move=sysop])
Current revision (03:34, 21 April 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ikb| PDB=3ikb | SCENE= }}
 
-
===The structure of a conserved protein from Streptococcus mutans UA159.===
 
-
==About this Structure==
+
==The structure of a conserved protein from Streptococcus mutans UA159.==
-
[[3ikb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKB OCA].
+
<StructureSection load='3ikb' size='340' side='right'caption='[[3ikb]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
-
[[Category: Streptococcus mutans]]
+
== Structural highlights ==
-
[[Category: Buck, K.]]
+
<table><tr><td colspan='2'>[[3ikb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_25175 Atcc 25175]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IKB FirstGlance]. <br>
-
[[Category: Hatzos, C.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SMU_1238c, Streptococcus mutans ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1309 ATCC 25175])</td></tr>
-
[[Category: Tan, K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ikb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ikb OCA], [https://pdbe.org/3ikb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ikb RCSB], [https://www.ebi.ac.uk/pdbsum/3ikb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ikb ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/3ikb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ikb ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Atcc 25175]]
 +
[[Category: Large Structures]]
 +
[[Category: Buck, K]]
 +
[[Category: Hatzos, C]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
[[Category: Apc63946]]
[[Category: Apc63946]]
[[Category: Conserved protein]]
[[Category: Conserved protein]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Streptococcus mutans ua159]]
[[Category: Streptococcus mutans ua159]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

The structure of a conserved protein from Streptococcus mutans UA159.

PDB ID 3ikb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools