This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ir4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ir4" [edit=sysop:move=sysop])
Current revision (03:39, 21 April 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ir4.png|left|200px]]
 
-
<!--
+
==1.2 Angstrom Crystal Structure of the Glutaredoxin 2 (grxB) from Salmonella typhimurium in complex with Glutathione==
-
The line below this paragraph, containing "STRUCTURE_3ir4", creates the "Structure Box" on the page.
+
<StructureSection load='3ir4' size='340' side='right'caption='[[3ir4]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ir4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IR4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3ir4| PDB=3ir4 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">grxB, STM1165 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ir4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ir4 OCA], [https://pdbe.org/3ir4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ir4 RCSB], [https://www.ebi.ac.uk/pdbsum/3ir4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ir4 ProSAT], [https://www.topsan.org/Proteins/CSGID/3ir4 TOPSAN]</span></td></tr>
-
===1.2 Angstrom Crystal Structure of the Glutaredoxin 2 (grxB) from Salmonella typhimurium in complex with Glutathione===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
[[3ir4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IR4 OCA].
+
<jmolCheckbox>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ir4_consurf.spt"</scriptWhenChecked>
-
[[Category: Anderson, W F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Dauter, Z.]]
+
</jmolCheckbox>
-
[[Category: Halavaty, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ir4 ConSurf].
-
[[Category: Minasov, G.]]
+
<div style="clear:both"></div>
-
[[Category: Onopriyenko, O.]]
+
__TOC__
-
[[Category: Peterson, S N.]]
+
</StructureSection>
-
[[Category: Skarina, T.]]
+
[[Category: Large Structures]]
-
[[Category: Wawrzak, Z.]]
+
[[Category: Salty]]
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Anderson, W F]]
 +
[[Category: Structural genomic]]
 +
[[Category: Dauter, Z]]
 +
[[Category: Halavaty, A]]
 +
[[Category: Minasov, G]]
 +
[[Category: Onopriyenko, O]]
 +
[[Category: Peterson, S N]]
 +
[[Category: Skarina, T]]
 +
[[Category: Wawrzak, Z]]
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Glutaredoxin 2]]
[[Category: Glutaredoxin 2]]
Line 30: Line 37:
[[Category: Idp00895]]
[[Category: Idp00895]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Structural genomic]]
 

Current revision

1.2 Angstrom Crystal Structure of the Glutaredoxin 2 (grxB) from Salmonella typhimurium in complex with Glutathione

PDB ID 3ir4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools