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3ir9
From Proteopedia
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| - | {{STRUCTURE_3ir9| PDB=3ir9 | SCENE= }} | ||
| - | ===C-terminal domain of Peptide Chain Release Factor from Methanosarcina mazei.=== | ||
| - | == | + | ==C-terminal domain of Peptide Chain Release Factor from Methanosarcina mazei.== |
| - | [[http://www.uniprot.org/uniprot/RF1_METMA RF1_METMA]] Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (By similarity). | + | <StructureSection load='3ir9' size='340' side='right'caption='[[3ir9]], [[Resolution|resolution]] 2.21Å' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3ir9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dsm_2053 Dsm 2053]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IR9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IR9 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | [[Category: | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Freeman, L | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MM_1347, prf1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2209 DSM 2053])</td></tr> |
| - | [[Category: Joachimiak, A | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ir9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ir9 OCA], [https://pdbe.org/3ir9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ir9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ir9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ir9 ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Osipiuk, J | + | == Function == |
| - | [[Category: Rakowski, E | + | [[https://www.uniprot.org/uniprot/RF1_METMA RF1_METMA]] Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (By similarity). |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ir9_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ir9 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Dsm 2053]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Freeman, L]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Osipiuk, J]] | ||
| + | [[Category: Rakowski, E]] | ||
[[Category: Apc36528 1]] | [[Category: Apc36528 1]] | ||
[[Category: C-terminal domain]] | [[Category: C-terminal domain]] | ||
| + | [[Category: Cytoplasm]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Peptide chain release factor]] | [[Category: Peptide chain release factor]] | ||
[[Category: Protein biosynthesis]] | [[Category: Protein biosynthesis]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
C-terminal domain of Peptide Chain Release Factor from Methanosarcina mazei.
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