This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ius
From Proteopedia
(Difference between revisions)
m (Protected "3ius" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3ius| PDB=3ius | SCENE= }} | ||
| - | ===The structure of a functionally unknown conserved protein from Silicibacter pomeroyi DSS=== | ||
| - | == | + | ==The structure of a functionally unknown conserved protein from Silicibacter pomeroyi DSS== |
| - | [[3ius]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3ius' size='340' side='right'caption='[[3ius]], [[Resolution|resolution]] 1.66Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| - | [[Category: Freeman, L | + | <table><tr><td colspan='2'>[[3ius]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IUS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IUS FirstGlance]. <br> |
| - | [[Category: Joachimiak, A | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr> |
| - | [[Category: | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Tan, K | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Silicibacter pomeroyi, SPO3755 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246200 RUEPO])</td></tr> |
| - | [[Category: Tesar, C | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ius FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ius OCA], [https://pdbe.org/3ius PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ius RCSB], [https://www.ebi.ac.uk/pdbsum/3ius PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ius ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iu/3ius_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ius ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Ruepo]] | ||
| + | [[Category: Freeman, L]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Tan, K]] | ||
| + | [[Category: Tesar, C]] | ||
[[Category: Apc63810]] | [[Category: Apc63810]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Silicibacter pomeroyi dss]] | [[Category: Silicibacter pomeroyi dss]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
The structure of a functionally unknown conserved protein from Silicibacter pomeroyi DSS
| |||||||||||
