This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3r5f
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP== | ==Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP== | ||
| - | <StructureSection load='3r5f' size='340' side='right' caption='[[3r5f]], [[Resolution|resolution]] 2.07Å' scene=''> | + | <StructureSection load='3r5f' size='340' side='right'caption='[[3r5f]], [[Resolution|resolution]] 2.07Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3r5f]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3r5f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanor Xanor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5F FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5f OCA], [https://pdbe.org/3r5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5f RCSB], [https://www.ebi.ac.uk/pdbsum/3r5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5f ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/Q2P8P8_XANOM Q2P8P8_XANOM]] Cell wall formation (By similarity).[SAAS:SAAS005905_004_000867][HAMAP-Rule:MF_00047] |
==See Also== | ==See Also== | ||
| - | *[[D-alanine-D-alanine ligase|D-alanine-D-alanine ligase]] | + | *[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: D-alanine--D-alanine ligase]] | [[Category: D-alanine--D-alanine ligase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Xanor]] | [[Category: Xanor]] | ||
[[Category: Doan, T T.N]] | [[Category: Doan, T T.N]] | ||
Revision as of 05:49, 15 June 2022
Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP
| |||||||||||
