This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3r5x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3r5x" [edit=sysop:move=sysop])
Current revision (05:50, 15 June 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3r5x is ON HOLD
+
==Crystal Structure of D-alanine--D-Alanine Ligase from Bacillus anthracis complexed with ATP==
 +
<StructureSection load='3r5x' size='340' side='right'caption='[[3r5x]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3r5x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5X FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3r23|3r23]]</div></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS2435, BA_2610, ddl, ddlB, GBAA_2610 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5x OCA], [https://pdbe.org/3r5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5x RCSB], [https://www.ebi.ac.uk/pdbsum/3r5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5x ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/DDL_BACAN DDL_BACAN]] Cell wall formation (By similarity).
-
Authors: Kim, Y., Mulligan, R., Hasseman, J., Anderson, W.F., Joachimiak, A., Csgid
+
==See Also==
-
 
+
*[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]]
-
Description: Crystal Structure of D-alanine--D-Alanine Ligase from Bacillus anthracis complexed with ATP
+
__TOC__
 +
</StructureSection>
 +
[[Category: D-alanine--D-alanine ligase]]
 +
[[Category: Large Structures]]
 +
[[Category: Anderson, W F]]
 +
[[Category: Structural genomic]]
 +
[[Category: Hasseman, J]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kim, Y]]
 +
[[Category: Mulligan, R]]
 +
[[Category: Alpha-beta structure]]
 +
[[Category: Csgid]]
 +
[[Category: Cytosol]]
 +
[[Category: Ligase]]

Current revision

Crystal Structure of D-alanine--D-Alanine Ligase from Bacillus anthracis complexed with ATP

PDB ID 3r5x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools