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3ucp
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3ucp is ON HOLD Authors: Edwards, M.J., Clarke, T.A. Description: Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6== | |
| + | <StructureSection load='3ucp' size='340' side='right'caption='[[3ucp]], [[Resolution|resolution]] 1.76Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3ucp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_sp._hrcr-6 Shewanella sp. hrcr-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UCP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UCP FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ufh|3ufh]], [[3ufk|3ufk]]</div></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">undA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1043181 Shewanella sp. HRCR-6])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ucp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ucp OCA], [https://pdbe.org/3ucp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ucp RCSB], [https://www.ebi.ac.uk/pdbsum/3ucp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ucp ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Members of the genus Shewanella translocate deca- or undeca-heme cytochromes to the external cell surface thus enabling respiration using extracellular minerals and polynuclear Fe(III) chelates. The high resolution structure of the first undeca-heme outer membrane cytochrome, UndA, reveals a crossed heme chain with four potential electron ingress/egress sites arranged within four domains. Sequence and structural alignment of UndA and the deca-heme MtrF reveals the extra heme of UndA is inserted between MtrF hemes 6 and 7. The remaining UndA hemes can be superposed over the heme chain of the decaheme MtrF, suggesting that a ten heme core is conserved between outer membrane cytochromes. The UndA structure has also been crystallographically resolved in complex with substrates, an Fe(III)-nitrilotriacetate dimer or an Fe(III)-citrate trimer. The structural resolution of these UndA-Fe(III)-chelate complexes provides a rationale for previous kinetic measurements on UndA and other outer membrane cytochromes. | ||
| - | + | The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates.,Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA Structure. 2012 Jul 3;20(7):1275-84. Epub 2012 Jun 7. PMID:22682743<ref>PMID:22682743</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 3ucp" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Shewanella sp. hrcr-6]] | ||
| + | [[Category: Clarke, T A]] | ||
| + | [[Category: Edwards, M J]] | ||
| + | [[Category: Beta-barrel]] | ||
| + | [[Category: C-type cytochrome]] | ||
| + | [[Category: C-type heme]] | ||
| + | [[Category: Cell surface]] | ||
| + | [[Category: Electron transport]] | ||
| + | [[Category: Transport protein]] | ||
Current revision
Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6
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