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3wks
From Proteopedia
(Difference between revisions)
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==Crystal structure of the SepCysS-SepCysE N-terminal domain complex from== | ==Crystal structure of the SepCysS-SepCysE N-terminal domain complex from== | ||
| - | <StructureSection load='3wks' size='340' side='right'caption='[[3wks]] | + | <StructureSection load='3wks' size='340' side='right'caption='[[3wks]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WKS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WKS FirstGlance]. <br> |
| - | </td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wks OCA], [https://pdbe.org/3wks PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wks RCSB], [https://www.ebi.ac.uk/pdbsum/3wks PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wks ProSAT]</span></td></tr> |
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wks OCA], [https://pdbe.org/3wks PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wks RCSB], [https://www.ebi.ac.uk/pdbsum/3wks PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wks ProSAT]</span></td></tr> | + | |
</table> | </table> | ||
| - | == Function == | ||
| - | [[https://www.uniprot.org/uniprot/SPSS_METJA SPSS_METJA]] Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L-cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)).<ref>PMID:15790858</ref> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Methanogenic archaea lack cysteinyl-tRNA synthetase; they synthesize Cys-tRNA and cysteine in a tRNA-dependent manner. Two enzymes are required: Phosphoseryl-tRNA synthetase (SepRS) forms phosphoseryl-tRNA(Cys) (Sep-tRNA(Cys)), which is converted to Cys-tRNA(Cys) by Sep-tRNA:Cys-tRNA synthase (SepCysS). This represents the ancestral pathway of Cys biosynthesis and coding in archaea. Here we report a translation factor, SepCysE, essential for methanococcal Cys biosynthesis; its deletion in Methanococcus maripaludis causes Cys auxotrophy. SepCysE acts as a scaffold for SepRS and SepCysS to form a stable high-affinity complex for tRNA(Cys) causing a 14-fold increase in the initial rate of Cys-tRNA(Cys) formation. Based on our crystal structure (2.8-A resolution) of a SepCysSSepCysE complex, a SepRSSepCysESepCysS structure model suggests that this ternary complex enables substrate channeling of Sep-tRNA(Cys). A phylogenetic analysis suggests coevolution of SepCysE with SepRS and SepCysS in the last universal common ancestral state. Our findings suggest that the tRNA-dependent Cys biosynthesis proceeds in a multienzyme complex without release of the intermediate and this mechanism may have facilitated the addition of Cys to the genetic code. | ||
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| - | Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.,Liu Y, Nakamura A, Nakazawa Y, Asano N, Ford KA, Hohn MJ, Tanaka I, Yao M, Soll D Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10520-5. doi:, 10.1073/pnas.1411267111. Epub 2014 Jul 7. PMID:25002468<ref>PMID:25002468</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3wks" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | + | [[Category: Asano N]] | |
| - | [[Category: Asano | + | [[Category: Nakamura A]] |
| - | [[Category: Nakamura | + | [[Category: Nakazawa Y]] |
| - | [[Category: Nakazawa | + | [[Category: Yao M]] |
| - | [[Category: Yao | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the SepCysS-SepCysE N-terminal domain complex from
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