This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mkf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:00, 7 September 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS 68==
==VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS 68==
-
<StructureSection load='1mkf' size='340' side='right' caption='[[1mkf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='1mkf' size='340' side='right'caption='[[1mkf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1mkf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mhv68 Mhv68]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1MKF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1mkf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Murid_gammaherpesvirus_4 Murid gammaherpesvirus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MKF FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dok|1dok]], [[1ml0|1ml0]]</td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mkf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mkf OCA], [https://pdbe.org/1mkf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mkf RCSB], [https://www.ebi.ac.uk/pdbsum/1mkf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mkf ProSAT], [https://www.topsan.org/Proteins/MCSG/1mkf TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">M3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33708 MHV68])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mkf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mkf OCA], [http://pdbe.org/1mkf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1mkf RCSB], [http://www.ebi.ac.uk/pdbsum/1mkf PDBsum], [http://www.topsan.org/Proteins/MCSG/1mkf TOPSAN]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[[https://www.uniprot.org/uniprot/O41925_MHV68 O41925_MHV68]]
-
The M3 protein encoded by murine gamma herpesvirus68 (gamma HV68) functions as an immune system saboteur by the engagement of chemoattractant cytokines, thereby altering host antiviral inflammatory responses. Here we report the crystal structures of M3 both alone and in complex with the CC chemokine MCP-1. M3 is a two-domain beta sandwich protein with a unique sequence and topology, forming a tightly packed anti-parallel dimer. The stoichiometry of the MCP-1:M3 complex is 2:2, with two monomeric chemokines embedded at distal ends of the preassociated M3 dimer. Conformational flexibility and electrostatic complementation are both used by M3 to achieve high-affinity and broad-spectrum chemokine engagement. M3 also employs structural mimicry to promiscuously sequester chemokines, engaging conservative structural elements associated with both chemokine homodimerization and binding to G protein-coupled receptors.
+
-
 
+
-
Structural basis of chemokine sequestration by a herpesvirus decoy receptor.,Alexander JM, Nelson CA, van Berkel V, Lau EK, Studts JM, Brett TJ, Speck SH, Handel TM, Virgin HW, Fremont DH Cell. 2002 Nov 1;111(3):343-56. PMID:12419245<ref>PMID:12419245</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 1mkf" style="background-color:#fffaf0;"></div>
+
-
 
+
-
==See Also==
+
-
*[[Viral chemokine binding protein M3|Viral chemokine binding protein M3]]
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Mhv68]]
+
[[Category: Large Structures]]
-
[[Category: Alexander, J M]]
+
[[Category: Murid gammaherpesvirus 4]]
-
[[Category: Fremont, D H]]
+
[[Category: Alexander JM]]
-
[[Category: Structural genomic]]
+
[[Category: Fremont DH]]
-
[[Category: Chemokine binding protein]]
+
-
[[Category: Decoy receptor]]
+
-
[[Category: Herpesvirus]]
+
-
[[Category: Immune system]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Viral immune evasion]]
+

Current revision

VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS 68

PDB ID 1mkf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools