This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
7wx6
From Proteopedia
(Difference between revisions)
m (Protected "7wx6" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==A Legionella acetyltransferase VipF== | |
| + | <StructureSection load='7wx6' size='340' side='right'caption='[[7wx6]], [[Resolution|resolution]] 2.27Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[7wx6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=7c4g 7c4g]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7WX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7WX6 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7wx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7wx6 OCA], [https://pdbe.org/7wx6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7wx6 RCSB], [https://www.ebi.ac.uk/pdbsum/7wx6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7wx6 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/Q5C8M4_LEGPN Q5C8M4_LEGPN]] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The pathogen Legionella pneumophila, which is the causative agent of Legionnaires' disease, secrets hundreds of effectors into host cells via its Dot/Icm secretion system to subvert host-cell pathways during pathogenesis. VipF, a conserved core effector among Legionella species, is a putative acetyltransferase, but its structure and catalytic mechanism remain unknown. Here, three crystal structures of VipF in complex with its cofactor acetyl-CoA and/or a substrate are reported. The two GNAT-like domains of VipF are connected as two wings by two beta-strands to form a U-shape. Both domains bind acetyl-CoA or CoA, but only in the C-terminal domain does the molecule extend to the bottom of the U-shaped groove as required for an active transferase reaction; the molecule in the N-terminal domain folds back on itself. Interestingly, when chloramphenicol, a putative substrate, binds in the pocket of the central U-shaped groove adjacent to the N-terminal domain, VipF remains in an open conformation. Moreover, mutations in the central U-shaped groove, including Glu129 and Asp251, largely impaired the acetyltransferase activity of VipF, suggesting a unique enzymatic mechanism for the Legionella effector VipF. | ||
| - | + | Structural basis for the acetylation mechanism of the Legionella effector VipF.,Chen TT, Lin Y, Zhang S, Han A Acta Crystallogr D Struct Biol. 2022 Sep 1;78(Pt 9):1110-1119. doi:, 10.1107/S2059798322007318. Epub 2022 Aug 9. PMID:36048151<ref>PMID:36048151</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 7wx6" style="background-color:#fffaf0;"></div> |
| - | [[Category: Chen | + | == References == |
| - | [[Category: Chen | + | <references/> |
| - | [[Category: Lin | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Legionella pneumophila]] | ||
| + | [[Category: Chen TT]] | ||
| + | [[Category: Chen Z]] | ||
| + | [[Category: Han AD]] | ||
| + | [[Category: Lin YL]] | ||
Revision as of 06:51, 14 September 2022
A Legionella acetyltransferase VipF
| |||||||||||
