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4dfx

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[[Image:4dfx.jpg|left|200px]]
 
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==Crystal structure of myristoylated K7C catalytic subunit of cAMP-dependent protein kinase in complex with SP20 and AMP-PNP==
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The line below this paragraph, containing "STRUCTURE_4dfx", creates the "Structure Box" on the page.
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<StructureSection load='4dfx' size='340' side='right'caption='[[4dfx]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4dfx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DFX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dfx OCA], [https://pdbe.org/4dfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dfx RCSB], [https://www.ebi.ac.uk/pdbsum/4dfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dfx ProSAT]</span></td></tr>
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{{STRUCTURE_4dfx| PDB=4dfx | SCENE= }}
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/IPKA_MOUSE IPKA_MOUSE]] Extremely potent competitive inhibitor of cAMP-dependent protein kinase activity, this protein interacts with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The catalytic (C) subunit of cAMP-dependent protein kinase [protein kinase A (PKA)] is a major target of cAMP signaling, and its regulation is of fundamental importance to biological processes. One mode of regulation is N-myristylation, which has eluded structural and functional characterization so far because most crystal structures are of the non-myristylated enzyme, are phosphorylated on Ser10, and generally lack electron density for the first 13 residues. We crystallized myristylated wild-type (WT) PKA and a K7C mutant as binary (bound to a substrate peptide) and ternary [bound to a substrate peptide and adenosine-5'-(beta,gamma-imido)triphosphate] complexes. There was clear electron density for the entire N-terminus in the binary complexes, both refined to 2.0 A, and K7C ternary complex, refined to 1.35 A. The N-termini in these three structures display a novel conformation with a previously unseen helix from residues 1 to 7. The K7C mutant appears to have a more stable N-terminus, and this correlated with a significant decrease in the B-factors for the N-terminus in the myr-K7C complexes compared to the WT binary complex. The N-terminus of the myristylated WT ternary complex, refined to 2.0 A, was disordered as in previous structures. In addition to a more ordered N-terminus, the myristylated K7C mutant exhibited a 53% increase in k(cat). The effect of nucleotide binding on the structure of the N-terminus in the WT protein and the kinetic changes in the K7C protein suggest that myristylation or occupancy of the myristyl binding pocket may serve as a site for allosteric regulation in the C-subunit.
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===Crystal structure of myristoylated K7C catalytic subunit of cAMP-dependent protein kinase in complex with SP20 and AMP-PNP===
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Role of N-Terminal Myristylation in the Structure and Regulation of cAMP-Dependent Protein Kinase.,Bastidas AC, Deal MS, Steichen JM, Keshwani MM, Guo Y, Taylor SS J Mol Biol. 2012 May 19. PMID:22617327<ref>PMID:22617327</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4dfx" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_22617327}}, adds the Publication Abstract to the page
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*[[CAMP-dependent protein kinase 3D structures|CAMP-dependent protein kinase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22617327 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22617327}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[4dfx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DFX OCA].
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==Reference==
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<ref group="xtra">PMID:022617327</ref><references group="xtra"/>
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[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: CAMP-dependent protein kinase]]
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[[Category: Bastidas AC]]
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[[Category: Bastidas, A C.]]
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[[Category: Steichen JM]]
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[[Category: Steichen, J M.]]
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[[Category: Taylor SS]]
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[[Category: Taylor, S S.]]
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[[Category: Mg]]
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[[Category: Myristoylated]]
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[[Category: Myristoylated on g1]]
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[[Category: Phosphorylated on s139]]
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[[Category: Phosphotransferase onto ser/thr]]
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[[Category: Pka regulatory subunit]]
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[[Category: Pki]]
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[[Category: Protein kinase]]
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[[Category: S338]]
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[[Category: T197]]
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[[Category: Transferase]]
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[[Category: Transferase-transferase inhibitor complex]]
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Current revision

Crystal structure of myristoylated K7C catalytic subunit of cAMP-dependent protein kinase in complex with SP20 and AMP-PNP

PDB ID 4dfx

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