We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

4dj4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==X-ray structure of mutant N211D of bifunctional nuclease TBN1 from Solanum lycopersicum (Tomato)==
==X-ray structure of mutant N211D of bifunctional nuclease TBN1 from Solanum lycopersicum (Tomato)==
-
<StructureSection load='4dj4' size='340' side='right' caption='[[4dj4]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='4dj4' size='340' side='right'caption='[[4dj4]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4dj4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lycopersicon_esculentum Lycopersicon esculentum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJ4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4dj4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DJ4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3sng|3sng]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dj4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dj4 OCA], [https://pdbe.org/4dj4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dj4 RCSB], [https://www.ebi.ac.uk/pdbsum/4dj4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dj4 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tbn1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4081 Lycopersicon esculentum])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dj4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dj4 OCA], [http://pdbe.org/4dj4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dj4 RCSB], [http://www.ebi.ac.uk/pdbsum/4dj4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dj4 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/Q0KFV0_SOLLC Q0KFV0_SOLLC]]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lycopersicon esculentum]]
+
[[Category: Large Structures]]
-
[[Category: Dohnalek, J]]
+
[[Category: Solanum lycopersicum]]
-
[[Category: Duskova, J]]
+
[[Category: Dohnalek J]]
-
[[Category: Hasek, J]]
+
[[Category: Duskova J]]
-
[[Category: Koval, T]]
+
[[Category: Hasek J]]
-
[[Category: Lipovova, P]]
+
[[Category: Koval T]]
-
[[Category: Matousek, J]]
+
[[Category: Lipovova P]]
-
[[Category: Podzimek, T]]
+
[[Category: Matousek J]]
-
[[Category: Skalova, T]]
+
[[Category: Podzimek T]]
-
[[Category: Stepankova, A]]
+
[[Category: Skalova T]]
-
[[Category: 3'-nucleotidase]]
+
[[Category: Stepankova A]]
-
[[Category: Bi-functional]]
+
-
[[Category: Cytosol membrane associated]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Mainly alpha helical]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Trinuclear metal centre]]
+

Revision as of 08:20, 21 September 2022

X-ray structure of mutant N211D of bifunctional nuclease TBN1 from Solanum lycopersicum (Tomato)

PDB ID 4dj4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dj4"
Personal tools