This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dr0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of Bacillus subtilis dimanganese(II) NrdF==
==Crystal structure of Bacillus subtilis dimanganese(II) NrdF==
-
<StructureSection load='4dr0' size='340' side='right' caption='[[4dr0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='4dr0' size='340' side='right'caption='[[4dr0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4dr0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DR0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4dr0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DR0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU17390, nrdF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dr0 OCA], [https://pdbe.org/4dr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dr0 RCSB], [https://www.ebi.ac.uk/pdbsum/4dr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dr0 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dr0 OCA], [http://pdbe.org/4dr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dr0 RCSB], [http://www.ebi.ac.uk/pdbsum/4dr0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dr0 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RIR2_BACSU RIR2_BACSU]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).
+
[[https://www.uniprot.org/uniprot/RIR2_BACSU RIR2_BACSU]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 18:
</div>
</div>
<div class="pdbe-citations 4dr0" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4dr0" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibrio subtilis ehrenberg 1835]]
+
[[Category: Bacillus subtilis]]
-
[[Category: Ribonucleoside-diphosphate reductase]]
+
[[Category: Large Structures]]
-
[[Category: Boal, A K]]
+
[[Category: Boal AK]]
-
[[Category: Cotruvo, J A]]
+
[[Category: Cotruvo Jr JA]]
-
[[Category: Rosenzweig, A C]]
+
[[Category: Rosenzweig AC]]
-
[[Category: Stubbe, J]]
+
[[Category: Stubbe J]]
-
[[Category: Manganese]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Ribonucleotide reductase]]
+

Revision as of 08:34, 21 September 2022

Crystal structure of Bacillus subtilis dimanganese(II) NrdF

PDB ID 4dr0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dr0"
Personal tools