This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ewa

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='3ewa' size='340' side='right'caption='[[3ewa]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3ewa' size='340' side='right'caption='[[3ewa]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ewa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EWA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ewa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EWA FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2etl|2etl]], [[3ew9|3ew9]]</div></td></tr>
 
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MMP1222, radA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ewa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ewa OCA], [https://pdbe.org/3ewa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ewa RCSB], [https://www.ebi.ac.uk/pdbsum/3ewa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ewa ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ewa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ewa OCA], [https://pdbe.org/3ewa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ewa RCSB], [https://www.ebi.ac.uk/pdbsum/3ewa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ewa ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/RADA_METMP RADA_METMP]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules (By similarity).
+
[https://www.uniprot.org/uniprot/RADA_METMI RADA_METMI] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.[HAMAP-Rule:MF_00348]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 38: Line 36:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: He, Y]]
+
[[Category: Methanococcus maripaludis]]
-
[[Category: Li, Y]]
+
[[Category: He Y]]
-
[[Category: Luo, Y]]
+
[[Category: Li Y]]
-
[[Category: Atp analogue]]
+
[[Category: Luo Y]]
-
[[Category: Atp-binding]]
+
-
[[Category: Atpase]]
+
-
[[Category: Dna binding protein]]
+
-
[[Category: Dna damage]]
+
-
[[Category: Dna recombination]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Rada]]
+
-
[[Category: Recombinase]]
+
-
[[Category: Recombination]]
+
-
[[Category: Strand exchange protein]]
+

Revision as of 04:34, 30 September 2022

RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and ammonium ions

PDB ID 3ewa

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ewa"
Personal tools