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| | ==X-ray crystal structure of Corynebacterium glutamicum Nrdh-redoxin at 1.5A== | | ==X-ray crystal structure of Corynebacterium glutamicum Nrdh-redoxin at 1.5A== |
| - | <StructureSection load='4fiw' size='340' side='right' caption='[[4fiw]], [[Resolution|resolution]] 1.50Å' scene=''> | + | <StructureSection load='4fiw' size='340' side='right'caption='[[4fiw]], [[Resolution|resolution]] 1.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4fiw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FIW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FIW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4fiw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FIW FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nrdH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fiw OCA], [https://pdbe.org/4fiw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fiw RCSB], [https://www.ebi.ac.uk/pdbsum/4fiw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fiw ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mycoredoxin Mycoredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.20.4.3 1.20.4.3] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4fiw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fiw OCA], [http://pdbe.org/4fiw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4fiw RCSB], [http://www.ebi.ac.uk/pdbsum/4fiw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4fiw ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/H7C6B5_CORGT H7C6B5_CORGT] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Micrococcus glutamicus kinoshita et al. 1958]] | + | [[Category: Corynebacterium glutamicum]] |
| - | [[Category: Mycoredoxin]] | + | [[Category: Large Structures]] |
| - | [[Category: Dufe, V T]] | + | [[Category: Dufe VT]] |
| - | [[Category: Khadija, W]] | + | [[Category: Khadija W]] |
| - | [[Category: Messens, J]] | + | [[Category: Messens J]] |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Thioredoxin fold]]
| + | |
| Structural highlights
Function
H7C6B5_CORGT
Publication Abstract from PubMed
NrdH-redoxins are small reductases with a high amino acid sequence similarity with glutaredoxins and mycoredoxins, but with a thioredoxin-like activity. They function as the electron donor for class Ib ribonucleotide reductases which convert ribonucleotides into deoxyribonucleotides. We solved the X-ray structure of oxidized NrdH-redoxin from Corynebacterium glutamicum (Cg) at 1.5 A resolution. Based on this monomeric structure we built a homology model of NrdH-redoxin from Mycobacterium tuberculosis (Mt). Both NrdH-redoxins have a typical thioredoxin-fold with the active site CXXC motif located at the N-terminus of the first alpha-helix. With size exclusion chromatography and small angle X-ray scattering, we show that Mt_NrdH-redoxin is a monomer in solution that has the tendency to form a non-swapped dimer at high protein concentration. Further, Cg_NrdH-redoxin and Mt_NrdH-redoxin catalytically reduce a disulfide with a specificity constant of respectively 1.9 x 10(6) M(-1) min(-1) and 5.6 x 10(6) M(-1) min(-1). They use a thiol-disulfide exchange mechanism with an N-terminal cysteine p K(a) lower than 6.5 for nucleophilic attack, while the p K(a) of the C-terminal cysteine is ~10. They exclusively receive electrons form thioredoxin reductase (TrxR) and not from mycothiol, the low molecular weight thiol of Actinomycetes. This specificity is shown in the structural model of the complex between NrdH-redoxin and TrxR, where the two surface exposed phenylalanines of TrxR perfectly fit into the conserved hydrophobic pocket of the NrdH-redoxin. Moreover, nrdh gene deletion and disruption experiments seem to indicate that NrdH-redoxin is essential in C. glutamicum.
NrdH-redoxin of Mycobacterium tuberculosis and Corynebacterium glutamicum dimerizes at high protein concentration and exclusively receives electrons from thioredoxin reductase.,Van Laer K, Dziewulska AM, Fislage M, Wahni K, Hbeddou A, Collet JF, Versees W, Mateos LM, Tamu Dufe V, Messens J J Biol Chem. 2013 Jan 28. PMID:23362277[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Van Laer K, Dziewulska AM, Fislage M, Wahni K, Hbeddou A, Collet JF, Versees W, Mateos LM, Tamu Dufe V, Messens J. NrdH-redoxin of Mycobacterium tuberculosis and Corynebacterium glutamicum dimerizes at high protein concentration and exclusively receives electrons from thioredoxin reductase. J Biol Chem. 2013 Jan 28. PMID:23362277 doi:http://dx.doi.org/10.1074/jbc.M112.392688
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