4g2i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structural basis for the accommodation of bis- and tris-aromatic derivatives in Vitamin D Nuclear Receptor==
==Structural basis for the accommodation of bis- and tris-aromatic derivatives in Vitamin D Nuclear Receptor==
-
<StructureSection load='4g2i' size='340' side='right' caption='[[4g2i]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='4g2i' size='340' side='right'caption='[[4g2i]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4g2i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G2I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G2I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4g2i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G2I FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0VQ:(3E,5E)-6-(3-{2-[3,4-BIS(HYDROXYMETHYL)PHENYL]ETHYL}PHENYL)-1,1,1-TRIFLUORO-2-(TRIFLUOROMETHYL)OCTA-3,5-DIEN-2-OL'>0VQ</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0VQ:(3E,5E)-6-(3-{2-[3,4-BIS(HYDROXYMETHYL)PHENYL]ETHYL}PHENYL)-1,1,1-TRIFLUORO-2-(TRIFLUOROMETHYL)OCTA-3,5-DIEN-2-OL'>0VQ</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1db1|1db1]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g2i OCA], [https://pdbe.org/4g2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g2i RCSB], [https://www.ebi.ac.uk/pdbsum/4g2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g2i ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VDR, NR1I1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g2i OCA], [http://pdbe.org/4g2i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4g2i RCSB], [http://www.ebi.ac.uk/pdbsum/4g2i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4g2i ProSAT]</span></td></tr>
+
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN]] Defects in VDR are the cause of rickets vitamin D-dependent type 2A (VDDR2A) [MIM:[http://omim.org/entry/277440 277440]]. A disorder of vitamin D metabolism resulting in severe rickets, hypocalcemia and secondary hyperparathyroidism. Most patients have total alopecia in addition to rickets.<ref>PMID:2849209</ref> <ref>PMID:8381803</ref> <ref>PMID:1652893</ref> <ref>PMID:2177843</ref> <ref>PMID:8106618</ref> <ref>PMID:8392085</ref> <ref>PMID:7828346</ref> <ref>PMID:8675579</ref> <ref>PMID:8961271</ref> <ref>PMID:9005998</ref>
+
[https://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN] Defects in VDR are the cause of rickets vitamin D-dependent type 2A (VDDR2A) [MIM:[https://omim.org/entry/277440 277440]. A disorder of vitamin D metabolism resulting in severe rickets, hypocalcemia and secondary hyperparathyroidism. Most patients have total alopecia in addition to rickets.<ref>PMID:2849209</ref> <ref>PMID:8381803</ref> <ref>PMID:1652893</ref> <ref>PMID:2177843</ref> <ref>PMID:8106618</ref> <ref>PMID:8392085</ref> <ref>PMID:7828346</ref> <ref>PMID:8675579</ref> <ref>PMID:8961271</ref> <ref>PMID:9005998</ref>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN]] Nuclear hormone receptor. Transcription factor that mediates the action of vitamin D3 by controlling the expression of hormone sensitive genes. Regulates transcription of hormone sensitive genes via its association with the WINAC complex, a chromatin-remodeling complex. Recruited to promoters via its interaction with the WINAC complex subunit BAZ1B/WSTF, which mediates the interaction with acetylated histones, an essential step for VDR-promoter association. Plays a central role in calcium homeostasis.<ref>PMID:16252006</ref> <ref>PMID:10678179</ref> <ref>PMID:15728261</ref> <ref>PMID:16913708</ref>
+
[https://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN] Nuclear hormone receptor. Transcription factor that mediates the action of vitamin D3 by controlling the expression of hormone sensitive genes. Regulates transcription of hormone sensitive genes via its association with the WINAC complex, a chromatin-remodeling complex. Recruited to promoters via its interaction with the WINAC complex subunit BAZ1B/WSTF, which mediates the interaction with acetylated histones, an essential step for VDR-promoter association. Plays a central role in calcium homeostasis.<ref>PMID:16252006</ref> <ref>PMID:10678179</ref> <ref>PMID:15728261</ref> <ref>PMID:16913708</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
==See Also==
==See Also==
*[[Sandbox vdr|Sandbox vdr]]
*[[Sandbox vdr|Sandbox vdr]]
-
*[[Vitamin D receptor|Vitamin D receptor]]
+
*[[Vitamin D receptor 3D structures|Vitamin D receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Ciesielski, F]]
+
[[Category: Large Structures]]
-
[[Category: Moras, D]]
+
[[Category: Ciesielski F]]
-
[[Category: Rochel, N]]
+
[[Category: Moras D]]
-
[[Category: Sato, Y]]
+
[[Category: Rochel N]]
-
[[Category: Alpha helical sandwich]]
+
[[Category: Sato Y]]
-
[[Category: Dna]]
+
-
[[Category: Ligand]]
+
-
[[Category: Nuclear receptor]]
+
-
[[Category: Nucleus]]
+
-
[[Category: Phosphorylation]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcription-transcription inhibitor complex]]
+
-
[[Category: Vdr]]
+

Revision as of 20:21, 19 October 2022

Structural basis for the accommodation of bis- and tris-aromatic derivatives in Vitamin D Nuclear Receptor

PDB ID 4g2i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools