This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4i3u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:39, 9 November 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of phosphonoacetaldehyde dehydrogenase in complex with phosphonoacetaldehyde==
==Structure of phosphonoacetaldehyde dehydrogenase in complex with phosphonoacetaldehyde==
-
<StructureSection load='4i3u' size='340' side='right' caption='[[4i3u]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='4i3u' size='340' side='right'caption='[[4i3u]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4i3u]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ensifer_meliloti Ensifer meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I3U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4i3u]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti_1021 Sinorhizobium meliloti 1021]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I3U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=POA:PHOSPHONOACETALDEHYDE'>POA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=POA:PHOSPHONOACETALDEHYDE'>POA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4i3t|4i3t]], [[4i3v|4i3v]], [[4i3w|4i3w]], [[4i3x|4i3x]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i3u OCA], [https://pdbe.org/4i3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i3u RCSB], [https://www.ebi.ac.uk/pdbsum/4i3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i3u ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">phnY, RB0979, SM_b21539 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266834 Ensifer meliloti])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_dehydrogenase_(NAD(+)) Aldehyde dehydrogenase (NAD(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.3 1.2.1.3] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i3u OCA], [http://pdbe.org/4i3u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i3u RCSB], [http://www.ebi.ac.uk/pdbsum/4i3u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i3u ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHNY_RHIME PHNY_RHIME] Plays an important role in phosphonate degradation by catalyzing the NAD-dependent conversion of phosphonoacetaldehyde (PnAA) to phosphonoacetate (PnA). Has low in vitro activity with the related compounds phosphonopropionaldehyde (3-oxopropyl phosphonate) and glyceraldehyde 3-phosphate.<ref>PMID:24361046</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 20:
==See Also==
==See Also==
-
*[[Aldehyde dehydrogenase|Aldehyde dehydrogenase]]
+
*[[Aldehyde dehydrogenase 3D structures|Aldehyde dehydrogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ensifer meliloti]]
+
[[Category: Large Structures]]
-
[[Category: Agarwal, V]]
+
[[Category: Sinorhizobium meliloti 1021]]
-
[[Category: Nair, S K]]
+
[[Category: Agarwal V]]
-
[[Category: Aldehyde dehydrogenase]]
+
[[Category: Nair SK]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Phosphonate catabolism]]
+

Current revision

Structure of phosphonoacetaldehyde dehydrogenase in complex with phosphonoacetaldehyde

PDB ID 4i3u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4i3u"
Personal tools