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Chemotaxis protein 3D structures
From Proteopedia
(Difference between revisions)
(New page: ==3D structures of chemotaxis protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *CheY **1ab6, [[1d4z]...) |
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | *CheY | + | *CheY or response regulator receiver protein |
| - | **[[1ab6]], [[1d4z]], [[1e6m]], [[1e6k]], [[1e6l]], [[1jbe]], [[1mih]], [[3oo0]], [[3oo1]], [[6chy]], [[5chy]] – EcCheY (mutant) – | + | **[[6tg7]] - EcCheY – ''Escherichia coli''<br /> |
| + | **[[1ab6]], [[1d4z]], [[1e6m]], [[1e6k]], [[1e6l]], [[1jbe]], [[1mih]], [[3oo0]], [[3oo1]], [[6chy]], [[5chy]] – EcCheY (mutant)<BR /> | ||
| + | **[[2id7]], [[2id9]], [[2idm]] – EcCheY-phosphono (mutant) <BR /> | ||
| + | **[[1djm]] – EcCheY – NMR<BR /> | ||
**[[1tmy]], [[2tmy]], [[3tmy]], [[4tmy]] - TmCheY – ''Thermotoga maritima''<br /> | **[[1tmy]], [[2tmy]], [[3tmy]], [[4tmy]] - TmCheY – ''Thermotoga maritima''<br /> | ||
**[[4qyw]], [[6c40]] - TmCheY (mutant) <br /> | **[[4qyw]], [[6c40]] - TmCheY (mutant) <br /> | ||
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**[[3gwg]] – HpCheY - ''Helicobacter pylori''<BR /> | **[[3gwg]] – HpCheY - ''Helicobacter pylori''<BR /> | ||
**[[3h1f]], [[3h1g]] - HpCheY (mutant) <BR /> | **[[3h1f]], [[3h1g]] - HpCheY (mutant) <BR /> | ||
| - | **[[2id7]], [[2id9]], [[2idm]] – EcCheY-phosphono (mutant) <BR /> | ||
| - | **[[1djm]] – EcCheY – NMR<BR /> | ||
**[[2chy]] – StCheY - ''Salmonella typhimurium'' <br /> | **[[2chy]] – StCheY - ''Salmonella typhimurium'' <br /> | ||
**[[5hm6]] – CheY – ''Acinetobacter baumannii'' <br /> | **[[5hm6]] – CheY – ''Acinetobacter baumannii'' <br /> | ||
| + | **[[7x1k]] – CheY – ''Listeria monocytogenes'' <br /> | ||
*''CheY complexes'' | *''CheY complexes'' | ||
**[[1zdm]] – EcCheY + Xe<BR /> | **[[1zdm]] – EcCheY + Xe<BR /> | ||
| - | **[[3h1e]] - HpCheY + BeF3 + Mn<BR /> | ||
**[[3f7n]], [[3fft]], [[3ffw]], [[3ffx]], [[3fgz]], [[3myy]], [[3olv]], [[3olw]], [[3olx]], [[3oly]] - EcCheY (mutant) + BeF3 + Mn<BR /> | **[[3f7n]], [[3fft]], [[3ffw]], [[3ffx]], [[3fgz]], [[3myy]], [[3olv]], [[3olw]], [[3olx]], [[3oly]] - EcCheY (mutant) + BeF3 + Mn<BR /> | ||
| - | **[[4hns]] - VcCheY + BeF3 + Mg<br /> | ||
| - | **[[4lx8]] - VcCheY + Mg<br /> | ||
| - | **[[6ekg]], [[6ekh]] – CheY + Mg – ''Methaococcus maripaludis''<br /> | ||
**[[1fqw]] - EcCheY + BeF3 + Mn<br /> | **[[1fqw]] - EcCheY + BeF3 + Mn<br /> | ||
**[[3rvj]], [[3rvk]], [[3rvl]], [[3rvm]], [[3rvn]], [[3rvo]], [[3rvp]], [[3rvq]], [[3rvr]], [[3rvs]] - EcCheY (mutant) + BeF3 + Mn<br /> | **[[3rvj]], [[3rvk]], [[3rvl]], [[3rvm]], [[3rvn]], [[3rvo]], [[3rvp]], [[3rvq]], [[3rvr]], [[3rvs]] - EcCheY (mutant) + BeF3 + Mn<br /> | ||
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**[[2b1j]], [[1f4v]] - EcCheY + flagellar motor switch protein FLIM N terminal<br /> | **[[2b1j]], [[1f4v]] - EcCheY + flagellar motor switch protein FLIM N terminal<br /> | ||
**[[1ffg]], [[1ffs]] – EcCheY + CheA CheY-binding domain<BR /> | **[[1ffg]], [[1ffs]] – EcCheY + CheA CheY-binding domain<BR /> | ||
| - | **[[1u0s]] - TmCheY response regulating domain + CheA P2 domain <BR /> | ||
**[[1ffw]] – EcCheY + CheA CheY-binding domain + imido phosphate<BR /> | **[[1ffw]] – EcCheY + CheA CheY-binding domain + imido phosphate<BR /> | ||
**[[1kmi]] - EcCheY + CheZ<BR /> | **[[1kmi]] - EcCheY + CheZ<BR /> | ||
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**[[2che]], [[2chf]] – StCheY + Mg<br /> | **[[2che]], [[2chf]] – StCheY + Mg<br /> | ||
**[[4iga]] - TmCheY + flagellar motor switch protein FLIM peptide<br /> | **[[4iga]] - TmCheY + flagellar motor switch protein FLIM peptide<br /> | ||
| + | **[[1u0s]] - TmCheY response regulating domain + CheA P2 domain <BR /> | ||
| + | **[[3h1e]] - HpCheY + BeF3 + Mn<BR /> | ||
| + | **[[4hns]] - VcCheY + BeF3 + Mg<br /> | ||
| + | **[[4lx8]] - VcCheY + Mg<br /> | ||
| + | **[[6ekg]], [[6ekh]] – MmCheY + Mg – ''Methaococcus maripaludis''<br /> | ||
| + | **[[7od9]] – MmCheY + CheF C-terminal<br /> | ||
*Chey-like | *Chey-like | ||
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**[[3hm4]] – CheX – ''Desulfovibrio desulfuricans''<BR /> | **[[3hm4]] – CheX – ''Desulfovibrio desulfuricans''<BR /> | ||
**[[3hzh]] – CheX + Che-3 – ''Borrelia burgdorferi''<br /> | **[[3hzh]] – CheX + Che-3 – ''Borrelia burgdorferi''<br /> | ||
| + | **[[6vpw]] – CheX – ''Vibrio vulnificus''<br /> | ||
*CheC | *CheC | ||
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**[[1fwp]] – EcCheA – NMR<br /> | **[[1fwp]] – EcCheA – NMR<br /> | ||
| + | **[[6s1k]] – EcCheA + CheW + methyl-accepting Che 1 – Cryo EM<br /> | ||
| + | **[[3ja6]] – EcCheA + CheW + methyl-accepting Che 2 – Cryo EM<br /> | ||
**[[1b3q]] – TmCheA dimerization, kinase and regulatory domains <BR /> | **[[1b3q]] – TmCheA dimerization, kinase and regulatory domains <BR /> | ||
| - | **[[1i5n]] – StCheA P1 domain<br /> | ||
**[[1i58]], [[1i59]], [[1i5a]], [[1i5b]], [[1i5d]] - TmCheA P4 domain + ATP analog<br /> | **[[1i58]], [[1i59]], [[1i5a]], [[1i5b]], [[1i5d]] - TmCheA P4 domain + ATP analog<br /> | ||
**[[6mi6]] - TmCheA P4 domain + ADP analog<br / | **[[6mi6]] - TmCheA P4 domain + ADP analog<br / | ||
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**[[4xiv]] - TmCheA kinase and dimerization domains<br /> | **[[4xiv]] - TmCheA kinase and dimerization domains<br /> | ||
**[[3ur1]], [[4jpb]] – TmCheA + CheW + methyl-accepting Che<br /> | **[[3ur1]], [[4jpb]] – TmCheA + CheW + methyl-accepting Che<br /> | ||
| + | **[[1i5n]] – StCheA P1 domain<br /> | ||
| + | **[[6y1y]] – CheA – ''Treponema denticola''<br /> | ||
*CheB | *CheB | ||
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*Methyl-accepting chemotaxis protein | *Methyl-accepting chemotaxis protein | ||
| - | **[[2m7u]], [[2m7v]] – TeMche – ''Thermosynechococcus elongatus''<br /> | + | **[[2m7u]], [[2m7v]], [[3vv4]], [[6upp]] – TeMche GAF domain 435-584 – ''Thermosynechococcus elongatus''<br /> |
| - | **[[ | + | **[[4fof]], [[4glq]], [[6p58]], [[6pru]], [[6pry]] – TeMche GAF domain (mutant)<br /> |
| - | + | ||
**[[3w2z]] – Mche residues 221-397 – Nostoc<br /> | **[[3w2z]] – Mche residues 221-397 – Nostoc<br /> | ||
**[[3g67]] – TmMche<BR /> | **[[3g67]] – TmMche<BR /> | ||
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**[[6ceq]] - VcMche PAS 2 domain <br /> | **[[6ceq]] - VcMche PAS 2 domain <br /> | ||
**[[6dtm]], [[6e09]], [[6e0a]] – HpMche Tlpa LBD <br /> | **[[6dtm]], [[6e09]], [[6e0a]] – HpMche Tlpa LBD <br /> | ||
| + | **[[6mni]] - Mche cache domain 28-293 – ''Pseudomonas syringae''<br /> | ||
| + | **[[6pzj]] - Mche N-terminal domain 43-304 – ''Leptospira interrogans''<br /> | ||
| + | **[[7w0w]] - Mche – ''Bacillus velezensis'' <br /> | ||
*Methyl-accepting chemotaxis protein complex | *Methyl-accepting chemotaxis protein complex | ||
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**[[3atp]] - EcMcheI LBD + serine<BR /> | **[[3atp]] - EcMcheI LBD + serine<BR /> | ||
**[[4z9h]], [[4z9i]] - EcMcheII LBD + aspartic acid<br /> | **[[4z9h]], [[4z9i]] - EcMcheII LBD + aspartic acid<br /> | ||
| - | **[[5ave]], [[6ioq]], [[6ior]], [[6ios]], [[6iot]], [[6iou]] - VcMche LBD + amino acid<br /> | + | **[[5ave]], [[6ioq]], [[6ior]], [[6ios]], [[6iot]], [[6iou]], [[6iov]] - VcMche LBD + amino acid<br /> |
**[[5avf]] - VcMche LBD + taurine<br /> | **[[5avf]] - VcMche LBD + taurine<br /> | ||
**[[5t7m]], [[5t65]], [[5ltx]], [[5lto]], [[5lt9]] - PaMche LBD + amino acid – ''Pseudomonas aeruginosa''<br /> | **[[5t7m]], [[5t65]], [[5ltx]], [[5lto]], [[5lt9]] - PaMche LBD + amino acid – ''Pseudomonas aeruginosa''<br /> | ||
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**[[6f9g]] - Mche LBD + putrescine – ''Pseudomonas putida''<br /> | **[[6f9g]] - Mche LBD + putrescine – ''Pseudomonas putida''<br /> | ||
**[[5zoh]] - Mche + biliverdin - Nostoc<br /> | **[[5zoh]] - Mche + biliverdin - Nostoc<br /> | ||
| + | **[[6w3o]], [[6w3r]], [[6w3p]], [[6w3s]] - CjMche LBD + Leu derivative – ''Campylobacter jejuni''<br /> | ||
| + | **[[6w3t]], [[6w3x]] - CjMche LBD + Val derivative <br /> | ||
| + | **[[6w3v]], [[6w3y]] - CjMche LBD + amino acid <br /> | ||
| + | **[[7psg]] - Mche LBD + betaine – ''Pectobacterium atrosepticum''<br /> | ||
*''Heme-containing methyl-accepting chemotaxis protein'' | *''Heme-containing methyl-accepting chemotaxis protein'' | ||
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**[[1yab]] – TmFLIN<BR /> | **[[1yab]] – TmFLIN<BR /> | ||
| - | *Chemotaxis protein MotB | + | *Chemotaxis protein MotB or motility protein B |
**[[3cyp]], [[3imp]], [[3s02]], [[3s03]], [[3s06]], [[3s0h]], [[3s0w]], [[3s0y]] – HpMotB C terminal<br /> | **[[3cyp]], [[3imp]], [[3s02]], [[3s03]], [[3s06]], [[3s0h]], [[3s0w]], [[3s0y]] – HpMotB C terminal<br /> | ||
**[[3cyq]] – HpMotB C terminal + N-acetylmuramic acid<BR /> | **[[3cyq]] – HpMotB C terminal + N-acetylmuramic acid<BR /> | ||
| + | **[[5y3z]], [[5y40]] – StMotB periplasmic domain (mutant) <br /> | ||
**[[2zov]], [[2zvy]], [[2zvz]] - StMotB C terminal<br /> | **[[2zov]], [[2zvy]], [[2zvz]] - StMotB C terminal<br /> | ||
Current revision
3D structures of chemotaxis protein
Updated on 21-November-2022
