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Chitinase 3D structures

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(New page: == 3D Structures of Chitinase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Chitinase I or chitotriosidase I ...)
Current revision (10:50, 21 November 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 8: Line 8:
**[[5hbf]] – hChi - human<br />
**[[5hbf]] – hChi - human<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
 +
**[[6so0]] – hChi - NMR <br />
 +
**[[4tx7]] – Chi – yard-long bean<br />
 +
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
-
**[[1k85]] – BcChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
+
**[[1k85]] – BciChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
-
**[[1itx]] - BcChi catalytic domain<br />
+
**[[1itx]] - BciChi catalytic domain<br />
-
**[[1ed7]] – BcChi chitin-binding domain - NMR<br />
+
**[[1ed7]] – BciChi chitin-binding domain - NMR<br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
-
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
 
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
-
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
+
**[[3oa5]], [[4dws]], [[4a5q]] – YeChi – ''Yersinia entomophaga''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mst]] – HbChi catalytic domain <br />
**[[4mst]] – HbChi catalytic domain <br />
-
**[[4tx7]] – Chi – yard-long bean<br />
+
**[[6lnr]] – Chi – ''Simarouba glauca'' <br />
*''Chitinase I binary complex''
*''Chitinase I binary complex''
 +
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
 +
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]], [[6jjr]], [[6jk6]], [[6ze8]] – hChi catalytic domain + inhibitor<br />
 +
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC - corn borer<br />
 +
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
Line 33: Line 39:
**[[3n1a]] - BcChi (mutant) + inhibitor<br />
**[[3n1a]] - BcChi (mutant) + inhibitor<br />
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
-
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
 
-
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8] – hChi catalytic domain + inhibitor<br />
 
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
Line 41: Line 45:
*Chitinase II
*Chitinase II
 +
**[[5y29]] – cbChi catalytic domain 1 residues 1606-1992 <br />
 +
**[[5y2a]] – cbChi catalytic domain 2 residues 2056-2438<br />
 +
**[[6jav]], [[6jaw]], [[6jax]], [[6jay]] – cbChi catalytic domain 1 + inhibitor <br />
 +
**[[1dxj]] – Chi – Jack bean<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
-
**[[1dxj]] – Chi – Jack bean<br />
 
-
**[[5y29]] – OfChi catalytic domain 1 residues 1606-1992 – ''Ostrinia furnacalis''<br />
 
-
**[[5y2a]] – OfChi catalytic domain 2 residues 2056-2438<br />
 
*''Chitinase II binary complex''
*''Chitinase II binary complex''
 +
**[[5y2b]] – cbChi catalytic domain 1 + acetylchitooctaose<br />
 +
**[[5y2c]] – cbChi catalytic domain 2 (mutant) + acetylchitooctaose<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
Line 56: Line 63:
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
-
**[[5y2b]] – OfChi catalytic domain 1 + acetylchitooctaose<br />
+
**[[6ogd]] – YeChi + toxin subunits yena1+yena2 – Cryo EM<br />
-
**[[5y2c]] – OfChi catalytic domain 2 (mutant) + acetylchitooctaose<br />
+
*Chitinase III
*Chitinase III
 +
**[[5wup]] – cbChi residues 1-482<br />
 +
**[[5wv8]] – cbChi residues 1-482 (mutant)<br />
 +
**[[5wv9]] – cbChi residues 1-482 + GlcNAc<br />
 +
**[[5wvb]] – cbChi residues 1-482 (mutant) + GlcNAc<br />
 +
**[[5wus]] – cbChi residues 528-987<br />
 +
**[[5wvf]] – cbChi residues 528-987 (mutant)<br />
 +
**[[5wvh]] – cbChi residues 528-987 + GlcNAc<br />
 +
**[[5wvg]] – cbChi residues 528-987 (mutant) + GlcNAc<br />
 +
**[[4toq]] – Chi - pomegrenate<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
Line 66: Line 81:
**[[2xvp]] – AfChi<br />
**[[2xvp]] – AfChi<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
-
**[[4toq]] – Chi - pomegrenate<br />
 
-
**[[5wup]] – OfChi residues 1-482<br />
 
-
**[[5wv8]] – OfChi residues 1-482 (mutant)<br />
 
-
**[[5wv9]] – OfChi residues 1-482 + GlcNAc<br />
 
-
**[[5wvb]] – OfChi residues 1-482 (mutant) + GlcNAc<br />
 
-
**[[5wus]] – OfChi residues 528-987<br />
 
-
**[[5wvf]] – OfChi residues 528-987 (mutant)<br />
 
-
**[[5wvh]] – OfChi residues 528-987 + GlcNAc<br />
 
-
**[[5wvg]] – OfChi residues 528-987 (mutant) + GlcNAc<br />
 
*Chitinase IV
*Chitinase IV
Line 102: Line 108:
*Chitinase A
*Chitinase A
-
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
 
-
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
 
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
 +
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
-
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
 
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
-
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
+
**[[1x6l]], [[1rd6]], [[5z7p]] – SmChiA (mutant)<br />
**[[1x6n]] - SmChi (mutant) + inhibitor<br />
**[[1x6n]] - SmChi (mutant) + inhibitor<br />
**[[1ffq]], [[2wk2]], [[2wly]], [[2wlz]], [[2wm0]] - SmChi + inhibitor<br />
**[[1ffq]], [[2wk2]], [[2wly]], [[2wlz]], [[2wm0]] - SmChi + inhibitor<br />
Line 117: Line 121:
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[4rl3]] – PrChiA catalytic domain <br />
 +
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
 +
**[[7f88]] – ChiA – ''Gemmabryum coronatum''<br />
 +
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
 +
**[[6s2x]] – ChiA C-terminal domain – ''Legionella pneumophila''<br />
*Chitinase B
*Chitinase B
-
**[[4z2g]], [[4z2h]], [[4z2i]], [[4z2j]], [[4z2k]], [[4z2l]] – SmChiB + inhibitor<br />
+
**[[4z2g]], [[4z2h]], [[4z2i]], [[4z2j]], [[4z2k]], [[4z2l]], [[6jk9]], [[6jkf]], [[7c34]], [[7c92]], [[7cb1]], [[7fd6]] – SmChiB + inhibitor<br />
 +
**[[6igy]] – ChiB – ''Aspergillus niger''<br />
 +
**[[6xyz]] – ChiB – ''Flavobacterium johnsoniae''<br />
 +
**[[7okr]] – ChiB catalytic domain – ''Alilvibrio salmonicida''<br />
*Chitinase C
*Chitinase C
Line 128: Line 139:
**[[4j0l]] – RyChiC + GlcNAC<br />
**[[4j0l]] – RyChiC + GlcNAC<br />
**[[4axn]] – SmChiC<br />
**[[4axn]] – SmChiC<br />
 +
 +
* Chitinase D
 +
 +
**[[6hm1]] - ChiD – ''Serratia proteamaculans''<br />
* Chitinase H
* Chitinase H
-
**[[3w4r]], [[5gpr]] – cbChiH – corn borer<br />
+
**[[3w4r]], [[5gpr]] – cbChiH<br />
**[[3wkz]] – cbChiH (mutant)<br />
**[[3wkz]] – cbChiH (mutant)<br />
**[[5gqb]] – cbChiH + chitohepatose<br />
**[[5gqb]] – cbChiH + chitohepatose<br />
 +
**[[6jm7]], [[6jm8]] – OfChiH – ''Ostrinia furnacalis''<br />
 +
**[[6jmb]], [[6jmn]] – OfChiH + inhibitor <br />
 +
**[[7vrg]] – OfChiH + pesticide<br />
 +
 +
* Chitinase L or family 18 chitinase
 +
 +
**[[6kst]] – CsChiL – ''Chitiniphilis shinaninensis'' <br />
 +
**[[6kxm]], [[6kxn]] – CsChiL (mutant) <br />
*Other chitinases
*Other chitinases
 +
**[[3fxy]] - hChi catalytic domain<br />
 +
**[[1lq0]] - hChi residues 22-286<br />
 +
**[[1guv]] - hChi residues 22-387<br />
 +
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
 +
**[[3cql]] – Chi – ''Carica papaya''<br />
 +
**[[1cns]] – Chi – barley<br />
 +
**[[3w3e]] – Chi – cowpea<br />
 +
**[[6kpl]] – cfChi – caterpillar fungus<br />
 +
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[3afb]] - PfChi catalytic domain (mutant)<br />
**[[3afb]] - PfChi catalytic domain (mutant)<br />
-
**[[1cns]] – Chi – ''Hordeum vulgare''<br />
 
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
-
**[[3fxy]] - hChi catalytic domain<br />
 
-
**[[1lq0]] - hChi residues 22-286<br />
 
-
**[[1guv]] - hChi residues 22-387<br />
 
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
-
**[[3cql]] – Chi – ''Carica papaya''<br />
 
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
-
**[[2uy2]] – yChi residues 22-315 – yeast<br />
 
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
-
**[[3w3e]] – Chi – cowpea<br />
 
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
Line 169: Line 194:
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
-
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
 
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
-
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
+
**[[5yuq]], [[7fbt]], [[5xwf]], [[7ftb]] – Chi – ''Rhizomucor miehei''<br />
 +
**[[6k7z]] – Chi – ''Pseudoalteromonas aurantia''<br />
 +
**[[7v91]] – FmChi catalytic domain – ''Ficus microcarpa''<br />
 +
**[[7v92]] – FmChi catalytic domain (mutant) <br />
*''Other chitinases binary complex''
*''Other chitinases binary complex''
-
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
 
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
 +
**[[6kpm]] – cfChi + fucose<br />
 +
**[[6kpn]], [[6kpo]] – cfChi (mutant) + fucosyl-acetylglucosamine<br />
 +
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
-
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
 
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
Line 190: Line 218:
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
 +
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
 +
 +
*Endochitinase
 +
 +
**[[6yn4]], [[7akq]] – ThChi42 (mutant) – ''Trichoderma harzianum''<br />
 +
**[[7zya]] – ThChi33 <br />
 +
**[[7zy9]] – ThChi33 (mutant) <br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]
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==Your Heading Here (maybe something like 'Structure')==
 
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
 
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This is a default text for your page '''Chitinase 3D structures'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
 
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
 
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== Function ==
 
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== Disease ==
 
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== Relevance ==
 
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== Structural highlights ==
 
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
 
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</StructureSection>
 
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== References ==
 
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<references/>
 

Current revision

3D Structures of Chitinase

Updated on 21-November-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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