This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Clp protease 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: ==3D structures of Clp protease== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *CLP P subunit **1tg6 - ClpP...)
Current revision (10:43, 24 November 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 4: Line 4:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*CLP P subunit
+
*Clp P subunit or ATP-dependent Clp protease proteolytic subunit
-
**[[1tg6]] - ClpP – human<br />
+
**[[1tg6]] - hClpP – human<br />
-
**[[1tyf]], [[1yg6]] – EcClpP – ''Escherichia coli''<br />
+
**[[1tyf]], [[1yg6]] – EcClpP – ''Escherichia coli''<br />
-
**[[1yg8]], [[3hln]] - EcClpP (mutant)<br />
+
**[[1yg8]], [[3hln]] - EcClpP (mutant) <br />
-
**[[2ds6]] - EcClpP Zinc-binding domain<br />
+
**[[1y7o]] – SpClpP – ''Streptococcus pneumonia''<br />
-
**[[1y7o]] – ClpP – ''Streptococcus pneumoniae''<br />
+
**[[2f6i]], [[4gm2]], [[4hnk]] – ClpP – ''Plasmodium falciparum''<br />
-
**[[2f6i]], [[4gm2]], [[4hnk]] - CLP – ''Plasmodium falciparum''<br />
+
**[[2cby]], [[2ce3]], [[2c8t]], [[4u0h]], [[5e0s]], [[5dzk]] - MtClpP – ''Mycobacterium tuberculosis''<br />
-
**[[2cby]], [[2ce3]], [[2c8t]], [[4u0h]], [[5e0s]], [[5dzk]] - MtCLP – ''Mycobacterium tuberculosis''<br />
+
**[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br />
-
**[[3fes]] - CdClpC – ''Clostridium difficile''<br />
+
-
**[[6mx2]] – CdClpP1 <br />
+
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
-
**[[3p2l]], [[5g1s]], [[5g1r]], [[5g1q]] - ClpP – ''Francisella tulerensis''<br />
+
**[[7feq]], [[7fes]] - BsClpP – Cryo EM<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
-
**[[3v5i]], [[4emp]], [[5c90]] - SaClpP (mutant)<br />
+
**[[3v5i]], [[4emp]], [[5c90]], [[6dkf]] - SaClpP (mutant) <br />
**[[2zl0]] - HpClpP – ''Helicobacter pylori''<br />
**[[2zl0]] - HpClpP – ''Helicobacter pylori''<br />
-
**[[2zl3]] - HpClpP (mutant)<br />
+
**[[2zl3]] - HpClpP (mutant) <br />
-
**[[4jcq]], [[4jct]], [[4ryf]] – LmClpP – ''Listeria monocytogenes''<br />
+
**[[4jcq]], [[4jct]], [[4ryf]] – LmClp – ''Listeria monocytogenes''<br />
-
**[[4jcr]] - LmClpP (mutant)<br />
+
**[[6sfx]] - LmClpP – Cryo EM<br />
 +
**[[4jcr]] - LmCLP (mutant)<br />
 +
**[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br />
 +
**[[6naq]] – NmClpP – ''Neisseria meningitidis''<br />
 +
**[[7kr2]] - NmClpP – Cryo EM<br />
 +
**[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br />
 +
**[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br />
 +
**[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br />
 +
**[[7dft]] – XoClpP – ''Xanthomonas oryzae''<br />
-
*''CLP P subunit complex''
+
*Clp P subunit binary complex
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
-
**[[6dl7]] - hClpP + pyrimidine derivative<br />
+
**[[6dl7]], [[7vp9]], [[7wh5]] - hClpP + pyrimidine derivative<br />
**[[6bba]] - hClpP + ADEP-28<br />
**[[6bba]] - hClpP + ADEP-28<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
 +
**[[6ppe]] – EcClpP + ClpX – Cryo EM<br />
 +
**[[7mk5]] – EcClpP + inhibitor<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
Line 36: Line 44:
**[[3tt7]] - BsClpP + DFP<br />
**[[3tt7]] - BsClpP + DFP<br />
**[[4u0g]] – MtClpP + ADEP + agonist<br />
**[[4u0g]] – MtClpP + ADEP + agonist<br />
-
**[[5dl1]] – SaClpP + inhibitor<br />
+
**[[5dl1]], [[6l40]] – SaClpP + inhibitor<br />
-
**[[5w18]], [[5vz2]] – SaClpP + peptide<br />
+
**[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br />
-
**[[5dkp]] – ClpP + ADEP – ''Neisseria meningitidis''<br />
+
**[[7wgs]], [[7wid]], [[7xbz]] – SaClpP + activator<br />
 +
**[[5dkp]] – NmClpP + ADEP <br />
 +
**[[6nah]] - NmClpP + ADEP-14<br />
 +
**[[7fep]], [[7fer]] – BsClpP + ADEP1 – Cryo EM <br />
 +
**[[7p80]], [[7p81]] – BsClpP + ADEP2<br />
 +
**[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
 +
**[[7dfu]] – XoClpP + ADEP-4 <br />
 +
**[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br />
-
*CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100
+
*CLP C
 +
 
 +
**[[5gui]] – ClpC1 N terminal – ''Arabidopsis thaliana'' <br />
 +
**[[3fes]] - CdClpC <br />
 +
**[[6pbq]] - MtClp N-terminal domain<br />
 +
**[[8a8u]], [[8a8v]], [[8a8w]] - MtClp + antibiotic + ADP<br />
 +
**[[6cn8]], [[6pbs]] - MtClp N-terminal domain 1-145 + antibiotics<br />
 +
**[[6em8]], [[6em9]] - SaClp – Cryo EM<br />
 +
 
 +
*Clpx or ATP-dependent Clp protease ATP-binding subunit ClpXP
 +
 
 +
**[[6pba]] - MtClp N-terminal domain<br />
 +
**[[3hte]], [[4i34]], [[4i5o]], [[4i63]], [[4i9k]] - EcClp <br />
 +
**[[3hws]], [[4i4l]] - EcClp + ADP<br />
 +
**[[4i81]] - EcClp + ATPgS <br />
 +
**[[6pp5]] - EcClp + ADP – Cryo EM<br />
 +
**[[6pp6]], [[6pp7]], [[6pp8]] - EcClp + ADP + ATPgS – Cryo EM<br />
 +
**[[6sfw]] - LmClp - Cryo EM<br />
 +
**[[6lsy]] - SpClp - Cryo EM<br />
 +
**[[6lt4]] - SpClp + ATPgS – Cryo EM<br />
 +
 
 +
For CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100
}}
}}

Current revision

3D structures of Clp protease

Updated on 24-November-2022

For CLP A subunit and CLP N see Heat Shock Proteins Hsp100

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Clp_protease_3D_structures"
Personal tools