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Clp protease 3D structures

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Current revision (10:43, 24 November 2022) (edit) (undo)
 
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{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*Clp P subunit
+
*Clp P subunit or ATP-dependent Clp protease proteolytic subunit
**[[1tg6]] - hClpP – human<br />
**[[1tg6]] - hClpP – human<br />
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**[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br />
**[[6mx2]] – CdClpP1 - ''Clostridium difficile'' <br />
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
**[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''<br />
 +
**[[7feq]], [[7fes]] - BsClpP – Cryo EM<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3q7h]] - ClpP – ''Coxiella burnetii''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
**[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]] - SaClpP – ''Staphylococcus aureus''<br />
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**[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br />
**[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''<br />
**[[6naq]] – NmClpP – ''Neisseria meningitidis''<br />
**[[6naq]] – NmClpP – ''Neisseria meningitidis''<br />
 +
**[[7kr2]] - NmClpP – Cryo EM<br />
**[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br />
**[[6pbu]] – ClpP – ''Mycobacterium smegmatis'' <br />
**[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br />
**[[7m1l]], [[7m1m]] – ClpP – ''Pseudomonas aeruginosa'' <br />
**[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br />
**[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' <br />
 +
**[[7dft]] – XoClpP – ''Xanthomonas oryzae''<br />
*Clp P subunit binary complex
*Clp P subunit binary complex
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
**[[6h23]] - hClpP (mutant) + carboxamide derivative<br />
-
**[[6dl7]] - hClpP + pyrimidine derivative<br />
+
**[[6dl7]], [[7vp9]], [[7wh5]] - hClpP + pyrimidine derivative<br />
**[[6bba]] - hClpP + ADEP-28<br />
**[[6bba]] - hClpP + ADEP-28<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
**[[2fzs]], [[3mt6]] - EcClpP + ADEP-1<br />
**[[6ppe]] – EcClpP + ClpX – Cryo EM<br />
**[[6ppe]] – EcClpP + ClpX – Cryo EM<br />
 +
**[[7mk5]] – EcClpP + inhibitor<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl2]] - HpClpP + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
**[[2zl4]] - HpClpP (mutant) + peptide<br />
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**[[5dl1]], [[6l40]] – SaClpP + inhibitor<br />
**[[5dl1]], [[6l40]] – SaClpP + inhibitor<br />
**[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br />
**[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide<br />
 +
**[[7wgs]], [[7wid]], [[7xbz]] – SaClpP + activator<br />
**[[5dkp]] – NmClpP + ADEP <br />
**[[5dkp]] – NmClpP + ADEP <br />
**[[6nah]] - NmClpP + ADEP-14<br />
**[[6nah]] - NmClpP + ADEP-14<br />
 +
**[[7fep]], [[7fer]] – BsClpP + ADEP1 – Cryo EM <br />
 +
**[[7p80]], [[7p81]] – BsClpP + ADEP2<br />
**[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br />
**[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
**[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''<br />
-
**[[7dfu]] – ClpP + ADEP-4 – ''Xanthomonas oryzae''<br />
+
**[[7dfu]] – XoClpP + ADEP-4 <br />
**[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br />
**[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''<br />
-
*Clp regulatory subunit or ClpX
+
*CLP C
 +
 
 +
**[[5gui]] – ClpC1 N terminal – ''Arabidopsis thaliana'' <br />
 +
**[[3fes]] - CdClpC <br />
 +
**[[6pbq]] - MtClp N-terminal domain<br />
 +
**[[8a8u]], [[8a8v]], [[8a8w]] - MtClp + antibiotic + ADP<br />
 +
**[[6cn8]], [[6pbs]] - MtClp N-terminal domain 1-145 + antibiotics<br />
 +
**[[6em8]], [[6em9]] - SaClp – Cryo EM<br />
 +
 
 +
*Clpx or ATP-dependent Clp protease ATP-binding subunit ClpXP
**[[6pba]] - MtClp N-terminal domain<br />
**[[6pba]] - MtClp N-terminal domain<br />
-
**[[3hte]], [[4i34]], [[[4i5o]], [4i63]] , [[4i9k]]- EcClp <br />
+
**[[3hte]], [[4i34]], [[4i5o]], [[4i63]], [[4i9k]] - EcClp <br />
**[[3hws]], [[4i4l]] - EcClp + ADP<br />
**[[3hws]], [[4i4l]] - EcClp + ADP<br />
**[[4i81]] - EcClp + ATPgS <br />
**[[4i81]] - EcClp + ATPgS <br />
**[[6pp5]] - EcClp + ADP – Cryo EM<br />
**[[6pp5]] - EcClp + ADP – Cryo EM<br />
**[[6pp6]], [[6pp7]], [[6pp8]] - EcClp + ADP + ATPgS – Cryo EM<br />
**[[6pp6]], [[6pp7]], [[6pp8]] - EcClp + ADP + ATPgS – Cryo EM<br />
-
**[[6sfw]] - LmClp – Cryo EM<br />
+
**[[6sfw]] - LmClp - Cryo EM<br />
-
**[[6lsy]] - SpClp – Cryo EM<br />
+
**[[6lsy]] - SpClp - Cryo EM<br />
**[[6lt4]] - SpClp + ATPgS – Cryo EM<br />
**[[6lt4]] - SpClp + ATPgS – Cryo EM<br />
-
*CLP C
+
For CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100
-
 
+
-
**[[5gui]] – ClpC1 N terminal – ''Arabidopsis thaliana'' <br />
+
-
**[[3fes]] - CdClpC <br />
+
-
**[[6pbq]] - MtClp N-terminal domain<br />
+
-
**[[6pbs]] - MtClp N-terminal domain + ecumicin<br />
+
-
**[[6cn8]] - MtClp N-terminal domain + rufomycin<br />
+
-
**[[6em8]], [[6em9]] - SaClp – Cryo EM<br />
+
-
 
+
-
CLP A subunit and CLP N see [[Heat Shock Proteins]] Hsp100
+
}}
}}

Current revision

3D structures of Clp protease

Updated on 24-November-2022

For CLP A subunit and CLP N see Heat Shock Proteins Hsp100

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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