This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4keq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4keq' size='340' side='right'caption='[[4keq]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
<StructureSection load='4keq' size='340' side='right'caption='[[4keq]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4keq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_japonicum_(strain_lmg_29417_/_cect_9101_/_maff_303099) Mesorhizobium japonicum (strain lmg 29417 / cect 9101 / maff 303099)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KEQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4keq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KEQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5PN:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-3(1H)-ONE'>5PN</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5PN:7-HYDROXY-6-METHYLFURO[3,4-C]PYRIDIN-3(1H)-ONE'>5PN</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4kep|4kep]], [[3aj3|3aj3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4keq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4keq OCA], [https://pdbe.org/4keq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4keq RCSB], [https://www.ebi.ac.uk/pdbsum/4keq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4keq ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mlr6805 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266835 Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-pyridoxolactonase 4-pyridoxolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.27 3.1.1.27] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4keq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4keq OCA], [http://pdbe.org/4keq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4keq RCSB], [http://www.ebi.ac.uk/pdbsum/4keq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4keq ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PDLA_RHILO PDLA_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Hydrolyzes 4-pyridoxolactone to 4-pyridoxic acid. Has lower activity toward N-hexanoyl-D,L-homoserine lactone, but is not active toward 5-pyridoxolactone and gamma-butyrolactone.
+
[https://www.uniprot.org/uniprot/PDLA_RHILO PDLA_RHILO] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Hydrolyzes 4-pyridoxolactone to 4-pyridoxic acid. Has lower activity toward N-hexanoyl-D,L-homoserine lactone, but is not active toward 5-pyridoxolactone and gamma-butyrolactone.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 4-pyridoxolactonase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Baba, S]]
+
[[Category: Mesorhizobium japonicum MAFF 303099]]
-
[[Category: Kobayashi, J]]
+
[[Category: Baba S]]
-
[[Category: Mikami, B]]
+
[[Category: Kobayashi J]]
-
[[Category: Mizutani, K]]
+
[[Category: Mikami B]]
-
[[Category: Takahashi, N]]
+
[[Category: Mizutani K]]
-
[[Category: Yagi, T]]
+
[[Category: Takahashi N]]
-
[[Category: Yoshikane, Y]]
+
[[Category: Yagi T]]
-
[[Category: Alpha-beta/beta-alpha fold]]
+
[[Category: Yoshikane Y]]
-
[[Category: Hydrolase]]
+
-
[[Category: Lactone]]
+

Revision as of 11:54, 30 November 2022

Crystal structure of 4-pyridoxolactonase, 5-pyridoxolactone bound

PDB ID 4keq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4keq"
Personal tools